Literature DB >> 30257096

Expedited assessment of terrestrial arthropod diversity by coupling Malaise traps with DNA barcoding 1.

Jeremy R deWaard1, Valerie Levesque-Beaudin1, Stephanie L deWaard1, Natalia V Ivanova1, Jaclyn T A McKeown1, Renee Miskie1, Suresh Naik1, Kate H J Perez1, Sujeevan Ratnasingham1, Crystal N Sobel1, Jayme E Sones1, Claudia Steinke1, Angela C Telfer1, Andrew D Young1,2, Monica R Young1, Evgeny V Zakharov1, Paul D N Hebert1.   

Abstract

Monitoring changes in terrestrial arthropod communities over space and time requires a dramatic increase in the speed and accuracy of processing samples that cannot be achieved with morphological approaches. The combination of DNA barcoding and Malaise traps allows expedited, comprehensive inventories of species abundance whose cost will rapidly decline as high-throughput sequencing technologies advance. Aside from detailing protocols from specimen sorting to data release, this paper describes their use in a survey of arthropod diversity in a national park that examined 21 194 specimens representing 2255 species. These protocols can support arthropod monitoring programs at regional, national, and continental scales.

Keywords:  DNA barcoding; Malaise trap; barcode index numbers; bio-monitoring; biological inventory; biomonitoring; codage à barres de l’ADN; inventaire biologique; numéros d’indexage de codes à barres; piège Malaise

Mesh:

Substances:

Year:  2018        PMID: 30257096     DOI: 10.1139/gen-2018-0093

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  19 in total

1.  DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera).

Authors:  Mikko Pentinsaari; Robert Anderson; Lech Borowiec; Patrice Bouchard; Adam Brunke; Hume Douglas; Andrew B T Smith; Paul D N Hebert
Journal:  Zookeys       Date:  2019-12-04       Impact factor: 1.546

2.  Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods.

Authors:  Paula Arribas; Carmelo Andújar; Kristine Bohmann; Jeremy R deWaard; Evan P Economo; Vasco Elbrecht; Stefan Geisen; Marta Goberna; Henrik Krehenwinkel; Vojtech Novotny; Lucie Zinger; Thomas J Creedy; Emmanouil Meramveliotakis; Víctor Noguerales; Isaac Overcast; Hélène Morlon; Anna Papadopoulou; Alfried P Vogler; Brent C Emerson
Journal:  Gigascience       Date:  2022-07-19       Impact factor: 7.658

3.  Sticky Pi is a high-frequency smart trap that enables the study of insect circadian activity under natural conditions.

Authors:  Quentin Geissmann; Paul K Abram; Di Wu; Cara H Haney; Juli Carrillo
Journal:  PLoS Biol       Date:  2022-07-07       Impact factor: 9.593

4.  Using Malaise Traps and Metabarcoding for Biodiversity Assessment in Vineyards: Effects of Weather and Trapping Effort.

Authors:  Marvin Kaczmarek; Martin H Entling; Christoph Hoffmann
Journal:  Insects       Date:  2022-05-27       Impact factor: 3.139

5.  Message in a Bottle-Metabarcoding enables biodiversity comparisons across ecoregions.

Authors:  D Steinke; S L deWaard; J E Sones; N V Ivanova; S W J Prosser; K Perez; T W A Braukmann; M Milton; E V Zakharov; J R deWaard; S Ratnasingham; P D N Hebert
Journal:  Gigascience       Date:  2022-04-28       Impact factor: 7.658

6.  Sharpening the DNA barcoding tool through a posteriori taxonomic validation: The case of Longitarsus flea beetles (Coleoptera: Chrysomelidae).

Authors:  Daniele Salvi; Emanuele Berrilli; Paola D'Alessandro; Maurizio Biondi
Journal:  PLoS One       Date:  2020-05-21       Impact factor: 3.240

Review 7.  Araneae of Canada.

Authors:  Robb Bennett; Gergin Blagoev; Claudia Copley
Journal:  Zookeys       Date:  2019-01-24       Impact factor: 1.546

8.  Biodiversity and threats in non-protected areas: A multidisciplinary and multi-taxa approach focused on the Atlantic Forest.

Authors:  Esteban Avigliano; Juan Jose Rosso; Dario Lijtmaer; Paola Ondarza; Luis Piacentini; Matías Izquierdo; Adriana Cirigliano; Gonzalo Romano; Ezequiel Nuñez Bustos; Andres Porta; Ezequiel Mabragaña; Emanuel Grassi; Jorge Palermo; Belen Bukowski; Pablo Tubaro; Nahuel Schenone
Journal:  Heliyon       Date:  2019-08-27

9.  A DNA Barcoding Survey of an Arctic Arthropod Community: Implications for Future Monitoring.

Authors:  Mikko Pentinsaari; Gergin A Blagoev; Ian D Hogg; Valerie Levesque-Beaudin; Kate Perez; Crystal N Sobel; Bryan Vandenbrink; Alex Borisenko
Journal:  Insects       Date:  2020-01-09       Impact factor: 2.769

10.  Integrative taxonomy of the genus Dudgeodes Sartori, 2008 (Insecta, Ephemeroptera, Teloganodidae) from the Philippines with description of new species and supplementary descriptions of Southeast Asian species.

Authors:  Jhoana M Garces; Michel Sartori; Hendrik Freitag
Journal:  Zookeys       Date:  2020-02-10       Impact factor: 1.546

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