| Literature DB >> 30254624 |
Alesia Levanova1, Minna M Poranen1.
Abstract
RNA interference (RNAi), which is mediated by small interfering RNAs (siRNAs) derived from viral genome or its replicative intermediates, is a natural antiviral defense in plants, fungi, and invertebrates. Whether RNAi naturally protects humans from viral invasion is still a matter of debate. Nevertheless, exogenous siRNAs are able to halt viral infection in mammals. The current review critically evaluates the production of antiviral siRNAs, delivery techniques to the infection sites, as well as provides an overview of antiviral siRNAs in clinical trials.Entities:
Keywords: RNA interference; antiviral shRNA; antiviral siRNA; siRNA delivery; siRNA production
Year: 2018 PMID: 30254624 PMCID: PMC6141738 DOI: 10.3389/fmicb.2018.02151
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Figure 1Enzymatic production of siRNA pools. (A) Target-specific DNA template is generated by PCR with forward and reverse primers containing at their 5′ ends promoter sequence for T7 DNA-dependent RNA polymerase. T7 polymerase transcribes purified DNA into single-stranded RNA (ssRNA) molecules, which are subsequently heated at 75°C for 5 min to denature secondary and tertiary ssRNA structures and to allow proper strand annealing. Nevertheless, long ssRNA molecules are prone to formation of branched structures and hairpins, which are difficult to denature and which prevent proper hybridization, and decrease the amount of full-length double-stranded RNAs (dsRNAs). (B) DNA template is generated by PCR with forward primer containing a promoter sequence for T7 polymerase and reverse primer comprising a promoter sequence for Phi6 RNA-dependent RNA polymerase. The resulting product is purified and a single-tube reaction is set up, where T7 polymerase transcribes DNA into ssRNA and Phi6 polymerase replicates the second strand of the RNA molecule. This approach results in a higher yield of full-length, biologically active dsRNA molecules compared to that where annealing step is used to generate dsRNA. (A,B) The generated dsRNAs are purified and cleaved by RNase III family enzyme into siRNA pool, which is processed according to the requirement of the downstream application.
Antiviral siRNAs in clinical trials.
| Naked siRNA | Intranasal | NCT00496821 NCT00658086 NCT01065935 | Phase 2, 2b, completed | Alnylam Pharmaceuticals | Zamora et al., | ||
| Plasmid DNA in cationic lipids | Intravenous | NA | Phase 1 | Nucleonics | Gish et al., | ||
| Polymer-based system (Dynamic PolyConjugate, DPC) | Intravenous | NCT02738008 | Phase 2, terminated | Arrowhead Pharmaceuticals | Wooddell et al., | ||
| DPC | Intravenous | NCT02797522 | Phase 1, terminated | Arrowhead Pharmaceuticals | NA | ||
| Modified delivery system (TRIM) | Subcutaneous | NCT03365947 | Phase 1/2a, recruiting | Arrowhead Pharmaceuticals | NA | ||
| Lipid nanoparticles (LNP) | Intravenous injection alongside steroids | NCT02631096 | Phase 2, completed | Arbutus Biopharma | Streinu-Cercel et al., | ||
| The same LNPs as for ARB-1467 | Intravenous | ACTRN12617000557336 | Phase 1 | Arbutus Biopharma | NA | ||
| N-acetylgalactoseamine (GalNac)-siRNA conjugates | Subcutaneous | NA | Phase 1 is starting in 2019 | Arbutus Biopharma | NA | ||
| GalNac-siRNA conjugates | Subcutaneous | NCT02826018 | Phase 1/2, terminated | Alnylam Pharmaceuticals | NA | ||
| Self-inactivating lentiviral vector based on HIV-1 backbone | Infusion transduced autologous hematopoietic stem cells or CD4+ T cells | NCT01734850 | Phase1/2, completed | Calimmune, Inc | Symonds et al., | ||
| Recombinant lentivirus vector HIV7 | Infusion of transduced autologous hematopoietic stem cells (CD34+) | Phase 1, active | City of Hope Medical Center and National Cancer Institute (NCI) | DiGiusto et al., | |||
| a cocktail of shRNAs targeting CCR5 and HIV genome | Lentivirus vector | Infusion of transduced autologous hematopoietic stem cells (CD34+) | NCT03517631 | Phase 1, recruiting | Shanghai Public Health Clinical Center and Kanglin Biotech | NA | |
| a shRNA targeted to CCR5, TRIM5alpha, and TAR decoy | Lentivirus vector | The same as above | NCT02797470 | Phase 1/2, recruiting | AIDS Malignancy Consortium | NA | |
| Adeno-associated viral vector 8 | Intravenous | NCT01899092 | Phase1/2 | Benitec Biopharma | NA | ||
| LNPs | Intravenous | NCT01518881 | Phase 1, terminated | Arbutus Biopharma (former Tekmira Pharmaceutical) | NA | ||
| LNPs | Intravenous | NCT02041715 | Phase 1, terminated | Arbutus Biopharma | Kraft et al., | ||
| New formulation of LNPs | Intravenous | NA | Single-arm phase 2 | Arbutus Biopharma | Dunning et al., |
NA – information is not available.
The information is obtained from the web page .
The information is obtained from the web page .