| Literature DB >> 30245618 |
Elísabet Bello-Arroyo1, Hélio Roque2, Alberto Marcos3, Javier Orihuel3, Alejandro Higuera-Matas3, Manuel Desco4,5,6,7, Valeria R Caiolfa2,8, Emilio Ambrosio3, Enrique Lara-Pezzi1,9,10, María Victoria Gómez-Gaviro4,7.
Abstract
Animal behavioral tests are essential to understand the bases of neurologic and psychological disorders, which can be evaluated by different methodological and experimental models. However, the quantification of behavioral tests results is limited by the considerable amount of time needed for manual evaluation and the high costs of automated analysis software. To overcome these limitations, we describe here a new, open source toolbox for ImageJ, called Mouse Behavioral Analysis Toolbox (MouBeAT), designed to analyze different behavioral tests in rodents semi-automatically. These tests include Open Field (OF), Elevated Plus Maze (EPM), Y-maze (YM) test and Morris Water Maze (MWM). MouBeAT showed a high correlation with manual evaluation in all the parameters analyzed for all the behavioral tests, reinforcing its value as an accurate analysis tool. This new tool is freely available online.Entities:
Keywords: ImageJ; behavioral tests; open source; rodents; semi-automated analysis
Year: 2018 PMID: 30245618 PMCID: PMC6137138 DOI: 10.3389/fnbeh.2018.00201
Source DB: PubMed Journal: Front Behav Neurosci ISSN: 1662-5153 Impact factor: 3.558
Figure 1Workflow of Mouse Behavioral Analysis Toolbox (MouBeAT) analysis. (A) Onetime steps of installation and adjustment of general preferences. (B) Main steps for specific tests. Gray filled boxes indicate mandatory steps while empty boxes indicate optional steps. Yellow region of interest (ROI) represent areas created by the user to defined regions of the maze during the workflow in this and all subsequent figures.
Automated parameters measured by Mouse Behavioral Analysis Toolbox (MouBeAT) in five behavioral tests.
| Behavioral test | Automated parameters calculated by MouBeAT |
|---|---|
| Open Field | Distance traveled and time spent in center and outer region. Number of entries in center. Freezing time in center and outer region. Speed average. |
| Elevated Plus Maze | Distance traveled and time spent in central area, closed and open arms. Number of entries in closed and open arms. Speed Average. Times of over the edge exploration. |
| Y-maze | Distance traveled. Number of visits, time spent and time to first visit to center, left and right arm. Speed average. Order of arms entry. Percentage of alternation = different triplets/total triplets. |
| Morris Water Maze | Distance traveled and time spent in every quadrant. Time close to pool wall (10 cm). Speed Average. Time to find platform. |
Figure 2Correlation of the measured variables in the open field (OF) test between MouBeAT and manual assessment. The OF test (A) was performed using 10 C57BL/6J male mice. Yellow ROI defines the base of the cube while blue ROI indicates the center region calculated by the software. Each dot represents time spent in the center (B), number of entries into the center (C), time spent in outer region (D), total freezing time (E), freezing time in the center (F) and freezing time in the outer region (G) for each mouse. In this and all subsequent Figures Pearson’s correlation coefficients were calculated for all variable except in cases where data followed a non-parametric distribution, in which case the Spearman correlation coefficient was used. Individual p values are displayed in the Figures. For (F) the Spearman correlation coefficient was used.
Details of the regression slopes.
| Test | Figure | Variable measured | Slope (a ± SE) |
|---|---|---|---|
| Open field | Time spent in center (s) | 1.41 ± 0.173 | |
| Entries in center (n) | 0.517 ± 0.124 | ||
| Time spent in outer region (s) | 1.19 ± 0.143 | ||
| Total freezing time (s) | 1.21 ± 0.279 | ||
| Freezing time in center (s) | 0.833 ± 0.153 | ||
| Freezing time in outer regions (s) | 1.23 ± 0.268 | ||
| Elevated Plus | Entries in closed arms (n) | 0.947 ± 0.122 | |
| Maze | Entries in open arms (n) | 0.962 ± 0.0645 | |
| Time spent in closed arms (s) | 0.945 ± 0.0919 | ||
| Time spent in open arms (s) | 0.869 ± 0.0461 | ||
| Time spent in central area (s) | 0.765 ± 0.148 | ||
| Edge exploration (s) | 0.668 ± 0.222 | ||
| Y-maze | Entries in center arm (n) | 0.988 ± 0.031 | |
| Entries in left arm (n) | 1.07 ± 0.0523 | ||
| Entries in right arm (n) | 0.911 ± 0.0556 | ||
| Time spent in center arm (s) | 1.03 ± 0.0339 | ||
| Time spent in left arm (s) | 1.07 ± 0.147 | ||
| Time spent in right arm (s) | 0.97 ± 0.0778 | ||
| Alternation (%) | 0.593 ± 0.253 | ||
| Time to first center arm visit (s) | 1.02 ± 0.0321 | ||
| Time to first left arm visit (s) | 0.993 ± 0.0268 | ||
| Time to first right arm visit (s) | 1.01 ± 0.0193 | ||
| Morris Water | Time to find platform (s) | 0.985 ± 0.00426 | |
| Maze | Time in Q1 (s) | 1.01 ± 0.0212 | |
| Time in Q2 (s) | 1.07 ± 0.038 | ||
| Time in Q3 (s) | 0.966 ± 0.0907 | ||
| Time in Q4 (s) | 1.1 ± 0.0856 | ||
| Time closed to pool wall (s) | 0.723 ± 0.0471 |
Figure 3Correlation of results for the Elevated Plus Maze (EPM) obtained by MouBeAT and manual observation.The EPM test (A) was performed on 10 C57BL/6J male mice. Yellow ROIs defines the central region and edges of the maze. Each dot represents the number of entries in closed (B) and open (C) arms, time spent in closed (D) and open (E) arms, time spent in central area (F) and times of over the edge exploration (G) for each mouse.
Figure 4Correlation between the results obtained with MouBeAT and those from manual assessment for the measured variables in the Y-maze (YM) test. The YM test (A) was performed using 10 C57BL/6J male mice. Yellow ROI defines the edges and central triangle of the maze. Each dot represents the number of entries into the center (B), left (D) and right arms (F), and the time spent in the center (C), left (E) and right (G) arms for each mouse.
Figure 5Correlation of arm alternation and time to visit each arm in the YM test between MouBeAT and manual observation. The YM test was performed using 10 C57BL/6J male mice. Each dot represents the percentage of alternation between arms (A), and the time it took each mouse to visit the center (B), left (C) and right (D) arms for the first time. For (A) the Spearman correlation coefficient was used.
Figure 6Correlation between MouBeAT and manual assessment of different parameters in the Morris Water Maze (MWM) test. The MWM test (A) was performed on 10 C57BL/6J male mice. Yellow ROI defines the edges and the platform regions, while blue ROIs define the quadrants and the region close to the pool wall, calculated by the software. Each dot represents the time needed by the mouse to find the platform (B), time in quadrants 1–4 (C–F) and the time spent close to the pool wall (G) for each mouse.