Literature DB >> 30242137

First-principles-based reaction kinetics from reactive molecular dynamics simulations: Application to hydrogen peroxide decomposition.

Daniil V Ilyin1, William A Goddard2, Julius J Oppenheim1, Tao Cheng1.   

Abstract

This paper presents our vision of how to use in silico approaches to extract the reaction mechanisms and kinetic parameters for complex condensed-phase chemical processes that underlie important technologies ranging from combustion to chemical vapor deposition. The goal is to provide an analytic description of the detailed evolution of a complex chemical system from reactants through various intermediates to products, so that one could optimize the efficiency of the reactive processes to produce the desired products and avoid unwanted side products. We could start with quantum mechanics (QM) to ensure an accurate description; however, to obtain useful kinetics we need to average over ∼10-nm spatial scales for ∼1 ns, which is prohibitively impractical with QM. Instead, we use the reactive force field (ReaxFF) trained to fit QM to carry out the reactive molecular dynamics (RMD). We focus here on showing that it is practical to extract from such RMD the reaction mechanisms and kinetics information needed to describe the reactions analytically. This analytic description can then be used to incorporate the correct reaction chemistry from the QM/ReaxFF atomistic description into larger-scale simulations of ∼10 nm to micrometers to millimeters to meters using analytic approaches of computational fluid dynamics and/or continuum chemical dynamics. In the paper we lay out the strategy to extract the mechanisms and rate parameters automatically without the necessity of knowing any details of the chemistry. We consider this to be a proof of concept. We refer to the process as RMD2Kin (reactive molecular dynamics to kinetics) for the general approach and as ReaxMD2Kin (ReaxFF molecular dynamics to kinetics) for QM-ReaxFF-based reaction kinetics.

Entities:  

Keywords:  RMD2Kin; ReaxFF reactive force field; ReaxMD2Kin; reaction kinetics; reactive molecular dynamics

Year:  2018        PMID: 30242137      PMCID: PMC6744889          DOI: 10.1073/pnas.1701383115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

1.  Shock waves in high-energy materials: the initial chemical events in nitramine RDX.

Authors:  Alejandro Strachan; Adri C T van Duin; Debashis Chakraborty; Siddharth Dasgupta; William A Goddard
Journal:  Phys Rev Lett       Date:  2003-08-28       Impact factor: 9.161

2.  Optimization and application of lithium parameters for the reactive force field, ReaxFF.

Authors:  Sang Soo Han; Adri C T van Duin; William A Goddard; Hyuck Mo Lee
Journal:  J Phys Chem A       Date:  2005-05-26       Impact factor: 2.781

3.  Development of the ReaxFF reactive force field for describing transition metal catalyzed reactions, with application to the initial stages of the catalytic formation of carbon nanotubes.

Authors:  Kevin D Nielson; Adri C T van Duin; Jonas Oxgaard; Wei-Qiao Deng; William A Goddard
Journal:  J Phys Chem A       Date:  2005-01-27       Impact factor: 2.781

4.  The ferroelectric and cubic phases in BaTiO3 ferroelectrics are also antiferroelectric.

Authors:  Qingsong Zhang; Tahir Cagin; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-25       Impact factor: 11.205

5.  Mechanism for antibody catalysis of the oxidation of water by singlet dioxygen.

Authors:  Deepshikha Datta; Nagarajan Vaidehi; Xin Xu; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

6.  ReaxFF(MgH) reactive force field for magnesium hydride systems.

Authors:  Sam Cheung; Wei-Qiao Deng; Adri C T van Duin; William A Goddard
Journal:  J Phys Chem A       Date:  2005-02-10       Impact factor: 2.781

7.  Simulations on the thermal decomposition of a poly(dimethylsiloxane) polymer using the ReaxFF reactive force field.

Authors:  Kimberly Chenoweth; Sam Cheung; Adri C T van Duin; William A Goddard; Edward M Kober
Journal:  J Am Chem Soc       Date:  2005-05-18       Impact factor: 15.419

8.  Peroxone chemistry: formation of H2O3 and ring-(HO2)(HO3) from O3/H2O2.

Authors:  Xin Xu; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-18       Impact factor: 11.205

9.  The gas phase reaction of singlet dioxygen with water: a water-catalyzed mechanism.

Authors:  Xin Xu; Richard P Muller; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-12       Impact factor: 11.205

10.  Atomistic-scale simulations of the initial chemical events in the thermal initiation of triacetonetriperoxide.

Authors:  Adri C T van Duin; Yehuda Zeiri; Faina Dubnikova; Ronnie Kosloff; William A Goddard
Journal:  J Am Chem Soc       Date:  2005-08-10       Impact factor: 15.419

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  3 in total

1.  Interface dynamics: Mechanisms of stabilization and destabilization and structure of flow fields.

Authors:  Snezhana I Abarzhi; Daniil V Ilyin; William A Goddard; Sergei I Anisimov
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-06       Impact factor: 11.205

2.  Interfaces and mixing: Nonequilibrium transport across the scales.

Authors:  Snezhana I Abarzhi; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-10       Impact factor: 11.205

3.  A graph-based network for predicting chemical reaction pathways in solid-state materials synthesis.

Authors:  Matthew J McDermott; Shyam S Dwaraknath; Kristin A Persson
Journal:  Nat Commun       Date:  2021-05-25       Impact factor: 14.919

  3 in total

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