Literature DB >> 30241960

Single-Cell RNA Sequencing of the Adult Mouse Kidney: From Molecular Cataloging of Cell Types to Disease-Associated Predictions.

Nils O Lindström1, Guilherme De Sena Brandine2, Andrew Ransick1, Andrew P McMahon3.   

Abstract

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Year:  2018        PMID: 30241960      PMCID: PMC6480390          DOI: 10.1053/j.ajkd.2018.07.002

Source DB:  PubMed          Journal:  Am J Kidney Dis        ISSN: 0272-6386            Impact factor:   8.860


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  20 in total

1.  Cross-platform single cell analysis of kidney development shows stromal cells express Gdnf.

Authors:  Bliss Magella; Mike Adam; Andrew S Potter; Meenakshi Venkatasubramanian; Kashish Chetal; Stuart B Hay; Nathan Salomonis; S Steven Potter
Journal:  Dev Biol       Date:  2017-11-26       Impact factor: 3.582

2.  Comparative Analysis of Single-Cell RNA Sequencing Methods.

Authors:  Christoph Ziegenhain; Beate Vieth; Swati Parekh; Björn Reinius; Amy Guillaumet-Adkins; Martha Smets; Heinrich Leonhardt; Holger Heyn; Ines Hellmann; Wolfgang Enard
Journal:  Mol Cell       Date:  2017-02-16       Impact factor: 17.970

3.  Transcriptomes of major renal collecting duct cell types in mouse identified by single-cell RNA-seq.

Authors:  Lihe Chen; Jae Wook Lee; Chung-Lin Chou; Anil V Nair; Maria A Battistone; Teodor G Păunescu; Maria Merkulova; Sylvie Breton; Jill W Verlander; Susan M Wall; Dennis Brown; Maurice B Burg; Mark A Knepper
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-31       Impact factor: 11.205

4.  Psychrophilic proteases dramatically reduce single-cell RNA-seq artifacts: a molecular atlas of kidney development.

Authors:  Mike Adam; Andrew S Potter; S Steven Potter
Journal:  Development       Date:  2017-08-29       Impact factor: 6.868

5.  Repression of Interstitial Identity in Nephron Progenitor Cells by Pax2 Establishes the Nephron-Interstitium Boundary during Kidney Development.

Authors:  Natalie Naiman; Kaoru Fujioka; Mari Fujino; M Todd Valerius; S Steven Potter; Andrew P McMahon; Akio Kobayashi
Journal:  Dev Cell       Date:  2017-05-22       Impact factor: 12.270

6.  Conserved and Divergent Features of Mesenchymal Progenitor Cell Types within the Cortical Nephrogenic Niche of the Human and Mouse Kidney.

Authors:  Nils O Lindström; Jinjin Guo; Albert D Kim; Tracy Tran; Qiuyu Guo; Guilherme De Sena Brandine; Andrew Ransick; Riana K Parvez; Matthew E Thornton; Laurence Baskin; Brendan Grubbs; Jill A McMahon; Andrew D Smith; Andrew P McMahon
Journal:  J Am Soc Nephrol       Date:  2018-02-15       Impact factor: 10.121

7.  (Re)Building a Kidney.

Authors:  Leif Oxburgh; Thomas J Carroll; Ondine Cleaver; Daniel R Gossett; Deborah K Hoshizaki; Jeffrey A Hubbell; Benjamin D Humphreys; Sanjay Jain; Jan Jensen; David L Kaplan; Carl Kesselman; Christian J Ketchum; Melissa H Little; Andrew P McMahon; Stuart J Shankland; Jason R Spence; M Todd Valerius; Jason A Wertheim; Oliver Wessely; Ying Zheng; Iain A Drummond
Journal:  J Am Soc Nephrol       Date:  2017-01-17       Impact factor: 10.121

Review 8.  Scaling single-cell genomics from phenomenology to mechanism.

Authors:  Amos Tanay; Aviv Regev
Journal:  Nature       Date:  2017-01-18       Impact factor: 49.962

9.  Notch1 and Notch2 in Podocytes Play Differential Roles During Diabetic Nephropathy Development.

Authors:  Mariya T Sweetwyne; Antje Gruenwald; Thiruvur Niranjan; Ryuichi Nishinakamura; Lothar J Strobl; Katalin Susztak
Journal:  Diabetes       Date:  2015-08-20       Impact factor: 9.461

10.  Transcription factor TFCP2L1 patterns cells in the mouse kidney collecting ducts.

Authors:  Max Werth; Kai M Schmidt-Ott; Thomas Leete; Andong Qiu; Christian Hinze; Melanie Viltard; Neal Paragas; Carrie J Shawber; Wenqiang Yu; Peter Lee; Xia Chen; Abby Sarkar; Weiyi Mu; Alexander Rittenberg; Chyuan-Sheng Lin; Jan Kitajewski; Qais Al-Awqati; Jonathan Barasch
Journal:  Elife       Date:  2017-06-03       Impact factor: 8.713

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  4 in total

1.  Development of a 2-dimensional atlas of the human kidney with imaging mass cytometry.

Authors:  Nikhil Singh; Zachary M Avigan; Judith A Kliegel; Brian M Shuch; Ruth R Montgomery; Gilbert W Moeckel; Lloyd G Cantley
Journal:  JCI Insight       Date:  2019-06-20

2.  Identification and characterization of cellular heterogeneity within the developing renal interstitium.

Authors:  Alicia R England; Christopher P Chaney; Amrita Das; Mohita Patel; Alicia Malewska; Daniel Armendariz; Gary C Hon; Douglas W Strand; Keri A Drake; Thomas J Carroll
Journal:  Development       Date:  2020-08-14       Impact factor: 6.868

3.  HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes.

Authors:  Jamie L Marshall; Benjamin R Doughty; Vidya Subramanian; Philine Guckelberger; Qingbo Wang; Linlin M Chen; Samuel G Rodriques; Kaite Zhang; Charles P Fulco; Joseph Nasser; Elizabeth J Grinkevich; Teia Noel; Sarah Mangiameli; Drew T Bergman; Anna Greka; Eric S Lander; Fei Chen; Jesse M Engreitz
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-21       Impact factor: 12.779

4.  Molecular characterization of nephron progenitors and their early epithelial derivative structures in the nephrogenic zone of the canine fetal kidney.

Authors:  Rawah Faraj; Angela Irizarry-Alfonzo; Pawan Puri
Journal:  Eur J Histochem       Date:  2019-09-23       Impact factor: 3.188

  4 in total

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