Literature DB >> 3024113

Nucleotide sequence and analysis of the 58.3 to 65.5-kb early region of bacteriophage T4.

K Valerie, J Stevens, M Lynch, E E Henderson, J K de Riel.   

Abstract

The complete 7.2-kb nucleotide sequence from the 58.3 to 65.5-kb early region of bacteriophage T4 has been determined by Maxam and Gilbert sequencing. Computer analysis revealed at least 20 open reading frames (ORFs) within this sequence. All major ORFs are transcribed from the left strand, suggesting that they are expressed early during infection. Among the ORFs, we have identified the ipIII, ipII, denV and tk genes. The ORFs are very tightly spaced, even overlapping in some instances, and when ORF interspacing occurs, promoter-like sequences can be implicated. Several of the sequences preceding the ORFs, in particular those at ipIII, ipII, denV, and orf61.9, can potentially form stable stem-loop structures.

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Year:  1986        PMID: 3024113      PMCID: PMC311883          DOI: 10.1093/nar/14.21.8637

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  42 in total

1.  A gene of bacteriophage T4 whose product prevents true late transcription on cytosine-containing T4 DNA.

Authors:  L Snyder; L Gold; E Kutter
Journal:  Proc Natl Acad Sci U S A       Date:  1976-09       Impact factor: 11.205

2.  A simple method of preparing large amounts of phiX174 RF 1 supercoiled DNA.

Authors:  G N Godson; D Vapnek
Journal:  Biochim Biophys Acta       Date:  1973-04-11

3.  Effect of growth conditions on the formation of the relaxation complex of supercoiled ColE1 deoxyribonucleic acid and protein in Escherichia coli.

Authors:  D B Clewell; D R Helinski
Journal:  J Bacteriol       Date:  1972-06       Impact factor: 3.490

4.  The low polarity of many membrane proteins.

Authors:  R A Capaldi; G Vanderkooi
Journal:  Proc Natl Acad Sci U S A       Date:  1972-04       Impact factor: 11.205

5.  Ahmad-Zadeh C,+AHMADAAZADEH C: Internal proteins of bacteriophage T4D: their characterization and relation to head structure and assembly.

Authors:  L W Black
Journal:  J Mol Biol       Date:  1971-04-14       Impact factor: 5.469

6.  Rapid bacteriophage sedimentation in the presence of polyethylene glycol and its application to large-scale virus purification.

Authors:  K R Yamamoto; B M Alberts; R Benzinger; L Lawhorne; G Treiber
Journal:  Virology       Date:  1970-03       Impact factor: 3.616

7.  DNA restriction enzyme from E. coli.

Authors:  M Meselson; R Yuan
Journal:  Nature       Date:  1968-03-23       Impact factor: 49.962

8.  A complementation analysis of the restriction and modification of DNA in Escherichia coli.

Authors:  H W Boyer; D Roulland-Dussoix
Journal:  J Mol Biol       Date:  1969-05-14       Impact factor: 5.469

9.  Isolation of deoxyribonucleic acid methylase mutants of Escherichia coli K-12.

Authors:  M G Marinus; N R Morris
Journal:  J Bacteriol       Date:  1973-06       Impact factor: 3.490

10.  Isolation of mutants of bacteriophage T4 unable to induce thymidine kinase activity.

Authors:  K V Chace; D H Hall
Journal:  J Virol       Date:  1973-08       Impact factor: 5.103

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  7 in total

1.  Structure of the N-terminal region of Haemophilus influenzae H10017: implications for function.

Authors:  L Yu; J Mack; P Hajduk; S W Fesik
Journal:  J Biomol NMR       Date:  2001-06       Impact factor: 2.835

2.  The sequences and activities of RegB endoribonucleases of T4-related bacteriophages.

Authors:  Lina Piesiniene; Lidija Truncaite; Aurelija Zajanckauskaite; Rimas Nivinskas
Journal:  Nucleic Acids Res       Date:  2004-10-14       Impact factor: 16.971

Review 3.  Viral proteins containing the purine NTP-binding sequence pattern.

Authors:  A E Gorbalenya; E V Koonin
Journal:  Nucleic Acids Res       Date:  1989-11-11       Impact factor: 16.971

Review 4.  Bacteriophage T4 genome.

Authors:  Eric S Miller; Elizabeth Kutter; Gisela Mosig; Fumio Arisaka; Takashi Kunisawa; Wolfgang Rüger
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

5.  Isolation and characterization of IS1409, an insertion element of 4-chlorobenzoate-degrading Arthrobacter sp. strain TM1, and development of a system for transposon mutagenesis.

Authors:  K H Gartemann; R Eichenlaub
Journal:  J Bacteriol       Date:  2001-06       Impact factor: 3.490

6.  Prediction of functional class of novel viral proteins by a statistical learning method irrespective of sequence similarity.

Authors:  L Y Han; C Z Cai; Z L Ji; Y Z Chen
Journal:  Virology       Date:  2005-01-05       Impact factor: 3.616

7.  Quaternary structure of vaccinia virus thymidine kinase.

Authors:  M E Black; D E Hruby
Journal:  Biochem Biophys Res Commun       Date:  1990-06-29       Impact factor: 3.322

  7 in total

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