Literature DB >> 30234379

Identify Cross Talk Between Circadian Rhythm and Coronary Heart Disease by Multiple Correlation Analysis.

Xiaoping Yan1, Yu Huang1, Jiabin Wu2.   

Abstract

Disorder in circadian rhythm has been revealed as a risk factor for coronary heart disease. Several studies in molecular biology established a gene interaction network using coronary heart susceptibility genes and the circadian rhythm pathway. However, cross talk between genes was mostly discovered in single gene pairs. There might be combination sets of genes intergraded as a unit to regulate the network. To resolve multiple variables in coronary heart susceptibility genes controlling circadian rhythm pathways, a multiple correlation analysis was applied to the transcriptome. Nine genes, including CUGBP, Elav-like family member (CELF); sodium leak channel, nonselective (NALCN); protein phosphatase 2 regulatory subunit B gamma (PPP2R2C); tubulin alpha 1c (TUBA1C); microtubule-associated protein 4 (MAP4); cofilin 1 (CFL1); myosin heavy chain 7 (MYH7); QKI, KH domain containing RNA binding (QKI); and maternal embryonic leucine zipper kinase (MELK), from coronary heart susceptibility were identified to predict the outcome of a linear combination of circadian rhythm pathway genes with R factor more than 0.7. G protein subunit alpha o1 (GNAO1), protein kinase C gamma (PRKCG), RBX, and G protein subunit beta 1 (GNB1) in the circadian rhythm pathway are characterized as combination variables to coexpress with coronary heart susceptibility genes.

Entities:  

Keywords:  circadian; coronary heart disease; multiple correlation; transcriptome.

Mesh:

Year:  2018        PMID: 30234379     DOI: 10.1089/cmb.2017.0254

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  3 in total

Review 1.  Circadian Regulation of Cardiac Physiology: Rhythms That Keep the Heart Beating.

Authors:  Jianhua Zhang; John C Chatham; Martin E Young
Journal:  Annu Rev Physiol       Date:  2019-10-07       Impact factor: 19.318

2.  Theory and Applications of the (Cardio) Genomic Fabric Approach to Post-Ischemic and Hypoxia-Induced Heart Failure.

Authors:  Dumitru Andrei Iacobas; Lei Xi
Journal:  J Pers Med       Date:  2022-07-29

Review 3.  The Emerging Roles of the RNA Binding Protein QKI in Cardiovascular Development and Function.

Authors:  Xinyun Chen; Jianwen Yin; Dayan Cao; Deyong Xiao; Zhongjun Zhou; Ying Liu; Weinian Shou
Journal:  Front Cell Dev Biol       Date:  2021-06-16
  3 in total

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