| Literature DB >> 30231895 |
Xi Xia1, Mei Ding1, Jin-Feng Xuan1, Jia-Xin Xing1, Hao Pang1, Bao-Jie Wang2, Jun Yao3.
Abstract
BACKGROUND: Schizophrenia is associated with multiple neurotransmitter disorders, including serotonin (5-hydroxytryptamine, 5-HT). The neuromodulatory action of serotonin on brain function largely depends on the action of specific subtypes of serotonin receptors. The serotonin receptor 1B (HTR1B) gene has been proposed to play putative roles in the development of multiple emotional and psychiatric disorders.Entities:
Keywords: Schizophrenia; Serotonin receptor 1B (HTR1B); Single-nucleotide polymorphisms (SNPs)
Mesh:
Substances:
Year: 2018 PMID: 30231895 PMCID: PMC6146515 DOI: 10.1186/s12888-018-1849-x
Source DB: PubMed Journal: BMC Psychiatry ISSN: 1471-244X Impact factor: 3.630
SNPs (14 total) detected in the northern Han Chinese population
| SNP | Chr. pos. | Base change1,2 | MAF | REGION |
| rs4140535 | 77,465,335 | − 1932 T > C | 0.375 | 5’near gene |
| rs1778258 | 77,464,492 | − 1089 G > A | 0.113 | 5’near gene |
| rs17273700 | 77,464,263 | − 860 T > C | 0.121 | 5’near gene |
| rs1228814 | 77,464,103 | −700 C > A | 0.166 | 5’near gene |
| rs11568817 | 77,463,665 | − 262 T > G | 0.116 | 5’UTR |
| rs130058 | 77,463,564 | −161 A > T | 0.077 | 5’UTR |
| rs6297 | 77,462,224 | *7 A > G | 0.112 | 3’UTR |
| rs3827804 | 77,462,215 | *16 G > A | 0.011 | 3’UTR |
| rs140792648 | 77,462,065 | *165_*166 Ins AG | 0.029 | 3’UTR |
| rs9361234 | 77,461,965 | *266 C > T | 0.113 | 3’UTR |
| rs183156887 | 77,461,962 | *269 C > A | 0.0064 | 3’UTR |
| rs76194807 | 77,461,898 | *333 G > T | 0.113 | 3’UTR |
| rs58138557 | 77,461,771 | *459_*460 Del GG | 0.115 | 3’UTR |
| rs13212041 | 77,461,407 | *824 A > G | 0.256 | 3’UTR |
1The A of the ATG start codon is designated as position 0
2An asterisk (*) indicates alterations in the coding region, which is 1173 bp in length
Allelic distributions of the 14 SNPs and their associations with schizophrenia
| Case ( | Control ( | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP | Allele1 | Genotype | No. | Frequency | No. | Frequency | Allele1 | Codominant (AA/aa,Aa/aa,AA/Aa)3 | Recessive | Dominant | Overdominant | ||
| rs4140535 | 0.725 | 0.806 | 1.000 | 0.729 | 0.909 | 0.684 | 0.764 | ||||||
| T | 394 | 0.635 | 391 | 0.625 | |||||||||
| CC | 44 | 0.142 | 46 | 0.147 | |||||||||
| CT | 138 | 0.445 | 143 | 0.457 | |||||||||
| TT | 128 | 0.413 | 124 | 0.396 | |||||||||
| rs1778258 | 0.585 | 1.000 | 1.000 | 0.541 | 1.000 | 0.552 | 0.542 | ||||||
| G | 556 | 0.897 | 555 | 0.887 | |||||||||
| AA | 4 | 0.013 | 4 | 0.013 | |||||||||
| AG | 56 | 0.181 | 63 | 0.201 | |||||||||
| GG | 250 | 0.806 | 246 | 0.786 | |||||||||
| rs17273700 | 0.423 | 0.772 | 0.377 | 0.185 | 0.576 | 0.279 | 0.184 | ||||||
| T | 554 | 0.894 | 550 | 0.879 | |||||||||
| CC | 7 | 0.023 | 5 | 0.016 | |||||||||
| CT | 52 | 0.168 | 66 | 0.211 | |||||||||
| TT | 251 | 0.810 | 242 | 0.773 | |||||||||
| rs1228814 | 1.000 | 0.374 | 0.247 | 0.465 | 0.276 | 0.663 | 0.356 | ||||||
| C | 517 | 0.834 | 522 | 0.834 | |||||||||
| AA | 13 | 0.042 | 8 | 0.026 | |||||||||
| AC | 77 | 0.248 | 88 | 0.281 | |||||||||
| CC | 220 | 0.710 | 217 | 0.693 | |||||||||
| rs11568817 | 0.315 | 1.000 | 1.000 | 0.254 | 1.000 | 0.271 | 0.255 | ||||||
| T | 559 | 0.902 | 553 | 0.883 | |||||||||
| GG | 5 | 0.016 | 5 | 0.016 | |||||||||
| GT | 51 | 0.165 | 63 | 0.201 | |||||||||
| TT | 254 | 0.819 | 245 | 0.783 | |||||||||
| rs130058 | 0.916 | 0.686 | 0.816 | 0.434 | 1.000 | 0.449 | 0.816 | ||||||
| T | 49 | 0.079 | 48 | 0.077 | |||||||||
| AA | 265 | 0.855 | 267 | 0.853 | |||||||||
| AT | 41 | 0.132 | 44 | 0.141 | |||||||||
| TT | 4 | 0.013 | 2 | 0.006 | |||||||||
| rs6297 | 0.409 | 0.599 | 0.786 | 0.565 | 0.788 | 0.460 | 0.816 | ||||||
| A | 541 | 0.873 | 536 | 0.856 | |||||||||
| AA | 237 | 0.765 | 231 | 0.738 | |||||||||
| AG | 67 | 0.216 | 74 | 0.236 | |||||||||
| GG | 6 | 0.019 | 8 | 0.026 | |||||||||
| rs3827804 | 0.802 | — | 0.800 | — | 0.800 | — | 0.800 | ||||||
| A | 8 | 0.013 | 7 | 0.011 | |||||||||
| AG | 8 | 0.026 | 7 | 0.022 | |||||||||
| GG | 302 | 0.974 | 306 | 0.978 | |||||||||
| AA | 0 | 0.000 | 0 | 0.000 | |||||||||
| rs140792648 | 0.862 | — | — | 0.860 | — | 0.860 | 0.860 | ||||||
| — | 604 | 0.974 | 608 | 0.971 | |||||||||
| —/— | 294 | 0.948 | 295 | 0.942 | |||||||||
| —/AG | 16 | 0.052 | 18 | 0.058 | |||||||||
| AG/AG | 0 | 0.000 | 0 | 0.000 | |||||||||
| rs9361234 | 0.408 | 1.000 | 1.000 | 0.348 | 1.000 | 0.364 | 0.349 | ||||||
| C | 559 | 0.902 | 555 | 0.887 | |||||||||
| CC | 254 | 0.819 | 247 | 0.789 | |||||||||
| CT | 51 | 0.165 | 61 | 0.195 | |||||||||
| TT | 5 | 0.016 | 5 | 0.016 | |||||||||
| rs183156887 | 1.000 | — | 1.000 | — | 1.000 | — | 1.000 | ||||||
| A | 4 | 0.006 | 4 | 0.006 | |||||||||
| AC | 4 | 0.013 | 4 | 0.013 | |||||||||
| CC | 306 | 0.987 | 309 | 0.987 | |||||||||
| AA | 0 | 0.000 | 0 | 0.000 | |||||||||
| rs76194807 | 0.486 | 0.725 | 0.242 | 0.472 | 0.340 | 0.725 | 0.242 | ||||||
| T | 79 | 0.127 | 71 | 0.113 | |||||||||
| GG | 234 | 0.755 | 247 | 0.789 | |||||||||
| GT | 73 | 0.235 | 61 | 0.195 | |||||||||
| TT | 3 | 0.010 | 5 | 0.016 | |||||||||
| rs58138557 | 0.411 | 1.000 | 1.000 | 0.351 | 1.000 | 0.367 | 0.352 | ||||||
| GG | 558 | 0.900 | 554 | 0.885 | |||||||||
| —/— | 5 | 0.016 | 5 | 0.016 | |||||||||
| —/GG | 52 | 0.168 | 62 | 0.198 | |||||||||
| GG/GG | 253 | 0.816 | 246 | 0.786 | |||||||||
| rs13212041 | 0.948 | 0.643 | 0.444 | 0.423 | 0.629 | 0.545 | 0.361 | ||||||
| G | 160 | 0.258 | 160 | 0.256 | |||||||||
| AA | 171 | 0.552 | 179 | 0.572 | |||||||||
| AG | 118 | 0.381 | 108 | 0.345 | |||||||||
| GG | 21 | 0.068 | 26 | 0.083 | |||||||||
1The allele for each SNP indicated is that with the higher patient frequency.
2The significance levels of chi-squared tests for codominant, dominant, recessive and overdominant model were adjusted using the Bonferroni correction (significance level p = 0.0036).
3The SNP allele that is observed at a higher frequency in patients is designated A; the other allele is designated a.
The relationship between rs1778258 and schizophrenia according to biological sex
| Group | rs1778258 | Male | Female | OR | 95% CI | |
|---|---|---|---|---|---|---|
| case | A | 41/304 | 23/316 | 0.012 | 1.986 | 1.161–3.398 |
| AA+AG | 38/152 | 22/158 | 0.015 | 2.061 | 1.152–3.684 | |
| control | A | 33/306 | 38/320 | 0.706 | 0.897 | 0.547–1.472 |
| AA+AG | 38/153 | 22/160 | 0.891 | 0.945 | 0.550–1.622 |
1A significance level p = 0.05
Fig. 1Linkage disequilibrium diagram of the 14 SNPs in HTR1B in the northern Han Chinese population. Cases D’. Cases r2. Controls D’. Controls r2. The number in the grid of the red-white diagram represents the D’ value, the deep red grid represents D’ 1, and the number in the grid of the black-white diagram represents the r2 value
The relationship between 5′-region haplotype and schizophrenia
| Haplotype | Case( | Control ( | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5’ | rs4140535 | rs1778258 | rs17273700 | rs1228814 | rs11568817 | rs130058 | N | F | N | F | OR | 95% CI | |
| 1 | T | G | T | C | T | A | 391.840 | 0.632 | 389.998 | 0.623 | 0.770 | 1.040 | 0.827–1.309 |
| 2 | C | A | T | C | T | A | 62.620 | 0.101 | 70.112 | 0.112 | 0.583 | 0.898 | 0.627–1.288 |
| 3 | C | G | T | C | T | A | 58.900 | 0.095 | 58.844 | 0.094 | 1.000 | 0.011 | 0.692–1.477 |
| 4 | C | G | C | A | G | T | 48.980 | 0.079 | 48.202 | 0.077 | 0.916 | 1.033 | 0.683–1.564 |
| 5 | C | G | T | A | T | A | 39.060 | 0.063 | 30.048 | 0.048 | 0.266 | 1.334 | 0.817–2.176 |
| 6 | C | G | C | A | G | A | 11.780 | 0.019 | 25.040 | 0.040 | 0.044 | 0.474 | 0.236–0.953 |
1Significance level p = 0.01
The relationship between 3′-region haplotype and schizophrenia
| Haplotype | Case ( | Control ( | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3’ | rs6297 | rs3827804 | rs140792648 | rs9361234 | rs183156887 | rs76194807 | rs58138557 | rs13212041 | N | frequency | N | frequency | OR | 95% CI | |
| 1 | A | G | A | C | C | G | T | A | 298.220 | 0.481 | 295.472 | 0.472 | 0.777 | 1.038 | 0.831–1.297 |
| 2 | A | G | A | C | C | G | T | G | 78.740 | 0.127 | 68.234 | 0.109 | 0.334 | 1.198 | 0.849–1.692 |
| 3 | G | G | A | C | C | G | T | G | 78.120 | 0.126 | 88.892 | 0.142 | 0.407 | 0.868 | 0.626–1.204 |
| 4 | A | G | A | C | C | T | T | A | 76.260 | 0.123 | 68.860 | 0.110 | 0.537 | 1.128 | 0.797–1.595 |
| 5 | A | G | A | T | C | G | A | A | 58.900 | 0.095 | 68.234 | 0.109 | 0.455 | 0.863 | 0.597–1.247 |
| 6 | A | G | T | C | C | G | T | A | 16.120 | 0.026 | 16.276 | 0.026 | 1.000 | 1.010 | 0.501–2.038 |
| 7 | A | A | A | C | C | G | T | A | 8.060 | 0.013 | 6.886 | 0.011 | 0.802 | 1.156 | 0.417–3.207 |
1Significance level = 0.0083