Literature DB >> 30231331

Liquid Biopsy to Identify Actionable Genomic Alterations.

Sai-Hong Ignatius Ou1, Misako Nagasaka1, Viola W Zhu1.   

Abstract

Liquid biopsy has been used extensively in solid malignancies to detect actionable driver mutations, to monitor treatment response, to detect recurrence, to identify resistance mechanisms, and to prognosticate outcome. Although many liquid biopsy sequencing platforms are being used, only five test kits have received government approval. We review representative literature on these government-approved liquid biopsy kits, which are primarily used to detect EGFR mutation in lung cancer and RAS ( KRAS, NRAS, BRAF) mutations in colorectal carcinoma. Another emerging use of single-gene liquid biopsy is to detect PIK3CA mutations and to understand resistance to hormonal blockade in breast and prostate cancers. The two most commonly used next-generation sequencing (NGS) liquid biopsy tests (Guardant 360, Guardant Health; FoundationACT, Foundation Medicine Inc.) are discussed. The ability and the applicability of NGS platform to detect tumor mutation burden are also addressed. Finally, the use of circulating tumor DNA (ctDNA) to detect minimal residual disease may be the most important use of ctDNA in the setting of tumor heterogeneity. The ability to identify "shedders" and "nonshedders" of ctDNA may provide important insight into the clinicopathologic characteristics of the tumor and portend important prognostic significance regarding survival.

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Year:  2018        PMID: 30231331      PMCID: PMC6865813          DOI: 10.1200/EDBK_199765

Source DB:  PubMed          Journal:  Am Soc Clin Oncol Educ Book        ISSN: 1548-8748


  81 in total

1.  Trastuzumab in combination with chemotherapy versus chemotherapy alone for treatment of HER2-positive advanced gastric or gastro-oesophageal junction cancer (ToGA): a phase 3, open-label, randomised controlled trial.

Authors:  Yung-Jue Bang; Eric Van Cutsem; Andrea Feyereislova; Hyun C Chung; Lin Shen; Akira Sawaki; Florian Lordick; Atsushi Ohtsu; Yasushi Omuro; Taroh Satoh; Giuseppe Aprile; Evgeny Kulikov; Julie Hill; Michaela Lehle; Josef Rüschoff; Yoon-Koo Kang
Journal:  Lancet       Date:  2010-08-19       Impact factor: 79.321

2.  Plasma ctDNA Analysis for Detection of the EGFR T790M Mutation in Patients with Advanced Non-Small Cell Lung Cancer.

Authors:  Suzanne Jenkins; James C-H Yang; Suresh S Ramalingam; Karen Yu; Sabina Patel; Susie Weston; Rachel Hodge; Mireille Cantarini; Pasi A Jänne; Tetsuya Mitsudomi; Glenwood D Goss
Journal:  J Thorac Oncol       Date:  2017-04-17       Impact factor: 15.609

3.  Association of EGFR L858R Mutation in Circulating Free DNA With Survival in the EURTAC Trial.

Authors:  Niki Karachaliou; Clara Mayo-de las Casas; Cristina Queralt; Itziar de Aguirre; Boris Melloni; Felipe Cardenal; Ramon Garcia-Gomez; Bartomeu Massuti; José Miguel Sánchez; Ruth Porta; Santiago Ponce-Aix; Teresa Moran; Enric Carcereny; Enriqueta Felip; Isabel Bover; Amelia Insa; Noemí Reguart; Dolores Isla; Alain Vergnenegre; Filippo de Marinis; Radj Gervais; Romain Corre; Luis Paz-Ares; Daniela Morales-Espinosa; Santiago Viteri; Ana Drozdowskyj; Núria Jordana-Ariza; Jose Luis Ramirez-Serrano; Miguel Angel Molina-Vila; Rafael Rosell
Journal:  JAMA Oncol       Date:  2015-05       Impact factor: 31.777

4.  Genomic Alterations in Circulating Tumor DNA from Diverse Cancer Patients Identified by Next-Generation Sequencing.

Authors:  Maria Schwaederle; Ranajoy Chattopadhyay; Shumei Kato; Paul T Fanta; Kimberly C Banks; In Sil Choi; David E Piccioni; Sadakatsu Ikeda; AmirAli Talasaz; Richard B Lanman; Lyudmila Bazhenova; Razelle Kurzrock
Journal:  Cancer Res       Date:  2017-08-14       Impact factor: 12.701

5.  Lung cancer's real adjuvant EGFR targeted therapy questions.

Authors:  Terry L Ng; D Ross Camidge
Journal:  Lancet Oncol       Date:  2017-11-21       Impact factor: 41.316

6.  Utility of Genomic Analysis In Circulating Tumor DNA from Patients with Carcinoma of Unknown Primary.

Authors:  Shumei Kato; Nithya Krishnamurthy; Kimberly C Banks; Pradip De; Kirstin Williams; Casey Williams; Brian Leyland-Jones; Scott M Lippman; Richard B Lanman; Razelle Kurzrock
Journal:  Cancer Res       Date:  2017-06-22       Impact factor: 12.701

7.  Gefitinib treatment in EGFR mutated caucasian NSCLC: circulating-free tumor DNA as a surrogate for determination of EGFR status.

Authors:  Jean-Yves Douillard; Gyula Ostoros; Manuel Cobo; Tudor Ciuleanu; Rebecca Cole; Gael McWalter; Jill Walker; Simon Dearden; Alan Webster; Tsveta Milenkova; Rose McCormack
Journal:  J Thorac Oncol       Date:  2014-09       Impact factor: 15.609

8.  Clinical validation of a highly sensitive assay to detect EGFR mutations in plasma cell-free DNA from patients with advanced lung adenocarcinoma.

Authors:  Yuping Li; Hanyan Xu; Shanshan Su; Junru Ye; Junjie Chen; Xuru Jin; Quan Lin; Dongqing Zhang; Caier Ye; Chengshui Chen
Journal:  PLoS One       Date:  2017-08-22       Impact factor: 3.240

9.  Prospective blinded study of somatic mutation detection in cell-free DNA utilizing a targeted 54-gene next generation sequencing panel in metastatic solid tumor patients.

Authors:  Seung Tae Kim; Won-Suk Lee; Richard B Lanman; Stefanie Mortimer; Oliver A Zill; Kyoung-Mee Kim; Kee Taek Jang; Seok-Hyung Kim; Se Hoon Park; Joon Oh Park; Young Suk Park; Ho Yeong Lim; Helmy Eltoukhy; Won Ki Kang; Woo Yong Lee; Hee-Cheol Kim; Keunchil Park; Jeeyun Lee; AmirAli Talasaz
Journal:  Oncotarget       Date:  2015-11-24

10.  Whole exome sequencing for determination of tumor mutation load in liquid biopsy from advanced cancer patients.

Authors:  Florence Koeppel; Steven Blanchard; Cécile Jovelet; Bérengère Genin; Charles Marcaillou; Emmanuel Martin; Etienne Rouleau; Eric Solary; Jean-Charles Soria; Fabrice André; Ludovic Lacroix
Journal:  PLoS One       Date:  2017-11-21       Impact factor: 3.240

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  23 in total

1.  Discovery, Significance, and Utility of JAK2 Mutation in Squamous Cell Carcinoma of the Lung.

Authors:  Jasmin Hundal; Nerea Lopetegui-Lia; James Vredenburgh
Journal:  Cureus       Date:  2022-06-13

2.  CAPP-seq analysis of circulating tumor DNA from patients with EGFR T790M-positive lung cancer after osimertinib.

Authors:  Ryoji Kato; Hidetoshi Hayashi; Kazuko Sakai; Shinichiro Suzuki; Koji Haratani; Takayuki Takahama; Junko Tanizaki; Yoshikane Nonagase; Kaoru Tanaka; Takeshi Yoshida; Masayuki Takeda; Kimio Yonesaka; Hiroyasu Kaneda; Kazuto Nishio; Kazuhiko Nakagawa
Journal:  Int J Clin Oncol       Date:  2021-06-11       Impact factor: 3.402

Review 3.  When Tissue is an Issue the Liquid Biopsy is Nonissue: A Review.

Authors:  July Rodríguez; Jenny Avila; Christian Rolfo; Alejandro Ruíz-Patiño; Alessandro Russo; Luisa Ricaurte; Camila Ordóñez-Reyes; Oscar Arrieta; Zyanya Lucia Zatarain-Barrón; Gonzalo Recondo; Andrés F Cardona
Journal:  Oncol Ther       Date:  2021-03-10

4.  Analytical and clinical validation of an amplicon-based next generation sequencing assay for ultrasensitive detection of circulating tumor DNA.

Authors:  Jonathan Poh; Kao Chin Ngeow; Michelle Pek; Kian-Hin Tan; Jing Shan Lim; Hao Chen; Choon Kiat Ong; Jing Quan Lim; Soon Thye Lim; Chwee Ming Lim; Boon Cher Goh; Yukti Choudhury
Journal:  PLoS One       Date:  2022-04-29       Impact factor: 3.752

Review 5.  Genetic Markers in Lung Cancer Diagnosis: A Review.

Authors:  Katarzyna Wadowska; Iwona Bil-Lula; Łukasz Trembecki; Mariola Śliwińska-Mossoń
Journal:  Int J Mol Sci       Date:  2020-06-27       Impact factor: 5.923

Review 6.  The Prospect and Challenges to the Flow of Liquid Biopsy in Africa.

Authors:  Dada Oluwaseyi Temilola; Martha Wium; Tangbadioa Herve Coulidiati; Henry Ademola Adeola; Giuseppina Maria Carbone; Carlo Vittorio Catapano; Luiz Fernando Zerbini
Journal:  Cells       Date:  2019-08-09       Impact factor: 6.600

7.  Cell-free DNA From Pleural Effusion Samples: Is It Right for Molecular Testing in Lung Adenocarcinoma?

Authors:  Attila Mokánszki; Emese Sarolta Bádon; Anikó Mónus; László Tóth; Nóra Bittner; Gábor Méhes
Journal:  Pathol Oncol Res       Date:  2021-03-30       Impact factor: 3.201

8.  Pre- and post-treatment blood-based genomic landscape of patients with ROS1 or NTRK fusion-positive solid tumours treated with entrectinib.

Authors:  Rafal Dziadziuszko; Tiffany Hung; Kun Wang; Voleak Choeurng; Alexander Drilon; Robert C Doebele; Fabrice Barlesi; Charlie Wu; Lucas Dennis; Joel Skoletsky; Ryan Woodhouse; Meijuan Li; Ching-Wei Chang; Brian Simmons; Todd Riehl; Timothy R Wilson
Journal:  Mol Oncol       Date:  2022-04-22       Impact factor: 7.449

9.  Analysis of EGFR, KRAS, and PIK3CA gene mutation rates and clinical distribution in patients with different types of lung cancer.

Authors:  Shuo Li; Xinju Li
Journal:  World J Surg Oncol       Date:  2021-07-03       Impact factor: 2.754

10.  NGS Analysis of Liquid Biopsy (LB) and Formalin-Fixed Paraffin-Embedded (FFPE) Melanoma Samples Using Oncomine™ Pan-Cancer Cell-Free Assay.

Authors:  Magdalena Olbryt; Marcin Rajczykowski; Wiesław Bal; Anna Fiszer-Kierzkowska; Alexander Jorge Cortez; Magdalena Mazur; Rafał Suwiński; Wiesława Widłak
Journal:  Genes (Basel)       Date:  2021-07-16       Impact factor: 4.096

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