Literature DB >> 30226193

[Development of digital PCR molecular tests for clinical practice: principles, practical implementation and recommendations].

Jérôme Alexandre Denis1, Juliette Nectoux2, Pierre-Jean Lamy3, Christelle Rouillac Le Sciellour4, Hélène Guermouche5, Anne-Sophie Alary6, Olivier Kosmider6, Nasrin Sarafan-Vasseur7, Cécile Jovelet8, Benoit Busser9, Philippe Nizard10, Valérie Taly10, Frédéric Fina11.   

Abstract

Digital PCR (dPCR) is a 3rd generation technology that complements traditional end-point PCR and real-time PCR. It was developed to overcome certain limitations of conventional amplification techniques, in particular for the detection of small amounts of nucleic acids and/or rare variants. This technology is in a full swing because of its high sensitivity and major applications in various domains such as oncology, transplantation or non-invasive prenatal testing. Consequently, PCRd also has great interest in many areas of medical biology, particularly for clinical applications aiming at detecting and quantifying specific genetic or epigenetic alterations of nucleic acids, even with specimens containing very low concentration of the nucleic acids of interest (e.g. liquid biopsies). However, this technique requires a good training of users and compliance with certain precautions. A lack in such a knowledge can lead to many errors in the conduct of the experiment and the interpretation of the results. In this review, we present the context in which this technology has emerged by describing in particular its principle and the main factors that can influence the quality of the analysis. Then, we propose a number of practical recommendations for the implementation of a test based on dPCR in clinical laboratories with an eye on quality requirements.

Keywords:  digital PCR; dropplet; micro-compartiments; microfluidics; quantitative PCR; real-time PCR; recommendations

Mesh:

Year:  2018        PMID: 30226193     DOI: 10.1684/abc.2018.1372

Source DB:  PubMed          Journal:  Ann Biol Clin (Paris)        ISSN: 0003-3898            Impact factor:   0.459


  4 in total

1.  Evaluation of droplet digital PCR for quantification of SARS-CoV-2 Virus in discharged COVID-19 patients.

Authors:  Chong Liu; Qingxin Shi; Mingfei Peng; Ruyue Lu; Haohao Li; Yingying Cai; Jiaxi Chen; Jiaqin Xu; Bo Shen
Journal:  Aging (Albany NY)       Date:  2020-11-01       Impact factor: 5.682

Review 2.  Current and innovative methods for the diagnosis of COVID‑19 infection (Review).

Authors:  Luca Falzone; Giuseppe Gattuso; Aristidis Tsatsakis; Demetrios A Spandidos; Massimo Libra
Journal:  Int J Mol Med       Date:  2021-04-13       Impact factor: 5.314

3.  Mutations in the telomerase reverse transcriptase promoter and PIK3CA gene are common events in penile squamous cell carcinoma of Italian and Ugandan patients.

Authors:  Noemy Starita; Francesca Pezzuto; Sabrina Sarno; Nunzia Simona Losito; Sisto Perdonà; Luigi Buonaguro; Franco M Buonaguro; Maria Lina Tornesello
Journal:  Int J Cancer       Date:  2022-03-15       Impact factor: 7.316

4.  Clinical correlation of influenza and respiratory syncytial virus load measured by digital PCR.

Authors:  Diego R Hijano; Jessica Brazelton de Cardenas; Gabriela Maron; Cherilyn D Garner; Jose A Ferrolino; Ronald H Dallas; Zhengming Gu; Randall T Hayden
Journal:  PLoS One       Date:  2019-09-03       Impact factor: 3.240

  4 in total

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