| Literature DB >> 30226155 |
Eleanor Adams, Monica Quinn, Sharon Tsay, Eugenie Poirot, Sudha Chaturvedi, Karen Southwick, Jane Greenko, Rafael Fernandez, Alex Kallen, Snigdha Vallabhaneni, Valerie Haley, Brad Hutton, Debra Blog, Emily Lutterloh, Howard Zucker.
Abstract
Candida auris is an emerging yeast that causes healthcare-associated infections. It can be misidentified by laboratories and often is resistant to antifungal medications. We describe an outbreak of C. auris infections in healthcare facilities in New York City, New York, USA. The investigation included laboratory surveillance, record reviews, site visits, contact tracing with cultures, and environmental sampling. We identified 51 clinical case-patients and 61 screening case-patients. Epidemiologic links indicated a large, interconnected web of affected healthcare facilities throughout New York City. Of the 51 clinical case-patients, 23 (45%) died within 90 days and isolates were resistant to fluconazole for 50 (98%). Of screening cultures performed for 572 persons (1,136 total cultures), results were C. auris positive for 61 (11%) persons. Environmental cultures were positive for samples from 15 of 20 facilities. Colonization was frequently identified during contact investigations; environmental contamination was also common.Entities:
Keywords: Candida auris; New York; United States; epidemiology; fungi; healthcare facilities; infection control; yeast
Mesh:
Substances:
Year: 2018 PMID: 30226155 PMCID: PMC6154128 DOI: 10.3201/eid2410.180649
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Figure 1Number of confirmed clinical cases of Candida auris in New York, USA, May 2013–April 2017. Dates indicate the month that the first sample positive for C. auris was collected. The cases from May 2013, April 2016, and June 2016 were retrospectively identified after the June 2016 clinical alert from the Centers for Disease Control and Prevention was issued (). The case from 2013, in a patient who had traveled to New York City from abroad for medical care, was probably a distinct importation with no further spread.
Figure 2Epidemiologic links between healthcare facilities affected by Candida auris, New York, USA, 2013–2017. Arrows between facilities denote transfer of case-patients from one facility to the other within 90 days before collection date of first positive culture. Bold arrows indicate transfer of >1 case-patient. Bold boxes indicate hospitals; nonbold boxes indicate long-term care facilities; boxes with roofs indicate private residences. Numbers indicate numbers of clinical cases (C) and screening cases (S) at that facility. Screening cases are placed at the facility of diagnosis. Clinical cases are also shown at the facility of diagnosis unless the specimen was collected during the first week of admission at the diagnosing facility; in such situations, the cases are shown at the previous facility.
Selected concurrent medical conditions and medical interventions for 51 persons with Candida auris infection, New York, USA, 2013–2017
| Characteristic | No. (%) persons |
|---|---|
| Concurrent condition | |
| Respiratory insufficiency requiring support | 33 (65) |
| Mechanical ventilation at time of diagnosis | 17 (33) |
| Neurologic disease* | 24 (47) |
| Diabetes | 18 (35) |
| Malignancies | 11 (22) |
| Colon cancer | 5 (10) |
| End-stage renal disease | 8 (16) |
| Hemodialysis | 7 (14) |
| Kidney transplant | 1 (2) |
| Decubitus ulcers | 10 (20) |
| Otitis with complications | 2 (4) |
| Medical interventions | |
| Hemodialysis | 7 (14) |
| Central venous catheter within 7 d before first positive culture for | 31 (61) |
| Gastrostomy tube at time of diagnosis | 27 (53) |
| Receipt of systemic antifungal medication within 90 d before first culture positive for | 25 (49) |
| Receipt of systemic antibiotics within 14 d before first culture positive for | 42 (82) |
*Includes seizure disorder (n = 8), cerebrovascular accident (n = 7), dementia (n = 4), anoxic brain injury (n = 3), spinal cord injury (n = 2), and 1 case each of Parkinson’s disease, multiple sclerosis, Huntington’s disease, Guillain-Barré syndrome, traumatic brain injury, pituitary tumor, and neuropathy.
Figure 3Long-term Candida auris colonization of clinical and screening case-patients, New York, USA, 2013–2017. Each patient for whom follow-up cultures were performed is represented by a horizontal line. The bottom 30 lines (pink shading) indicate clinical case-patients; the top 8 (blue shading) indicate screening case-patients. Follow-up cultures were collected from a variety of sites, typically axilla and groin and often nares, rectum, urine, and wounds. Persons were considered free of colonization with C. auris and eligible for removal of contact precautions when 2 sets of surveillance cultures at multiple sites, taken at least 1 week apart, were negative; only 1 person indicated on the figure (second from bottom) met this criterion.
Environmental contamination with Candida auris in healthcare facilities, New York, USA, 2013–2017*
| Category, object or surface | No. samples | Positive by culture, no. (%) | Positive by PCR and negative by culture, no. (%) | Negative by culture and PCR, no. (%) |
|---|---|---|---|---|
| Near-patient surfaces and objects in rooms | ||||
| Bedside/over bed table | 44 | 2 (5) | 2 (5) | 40 (91) |
| Bed rail | 49 | 7 (14) | 5 (10) | 37 (76) |
| TV remote/call button | 36 | 2 (6) | 2 (6) | 32 (89) |
| IV poles | 21 | 5 (24) | 1 (5) | 15 (71) |
| Bed | 17 | 4 (24) | 0 | 13 (77) |
| Privacy curtain | 6 | 2 (33) | 0 | 4 (67) |
| Miscellaneous other† | 5 | 0 | 1 (20) | 4 (80) |
| Total | 178 | 22 (12) | 11 (6) | 145 (82) |
*A total of 660 samples were collected from surfaces, objects, and equipment in the rooms of C. auris case-patients and from mobile equipment outside the rooms on the affected nursing units. In addition, 62 samples from surfaces within the nursing units but outside the patient rooms and 23 samples from outside the affected nursing units were negative by culture and PCR. The location of 36 samples could not be ascertained; 2 were positive by culture. PPE, personal protective equipment; TV, television. †PCR positive from light cord. ‡Cultures positive from handrail and phone. §Cultures positive from glucometers (n = 2), vital signs machine, and stretcher. ¶Culture positive from bedpan flusher.
Isolates received by the New York State public health laboratory, Wadsworth Center, Albany, NY, USA, from clinical laboratories for the purpose of identifying or excluding Candida auris, through April 30, 2017*
| Organism, no. isolated | Clinical laboratories’ identification system | Wadsworth Center identification using MALDI-TOF MS, no. isolates‡ | |||
|---|---|---|---|---|---|
| API | VITEK 2 | VITEK MS† | Other | ||
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| 36 |
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| No identification, 13 | 2 | 2 | 9 |
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| 7 | 16 |
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*API, bioMérieux, Inc., Durham, NC, USA; MALDI-TOF MS, Bruker Daltonics, Inc., Billerica, MA, USA; VITEK 2, bioMérieux, Durham, NC, USA; VITEK MS, bioMérieux, Solna, Sweden. MALDI-TOF, matrix-assisted laser desorption/ionization time-of-flight; MS, mass spectrometry. †No C. auris entry. ‡Research use only library was expanded in-house by adding 10 C. auris isolates comprising clades I–IV (CDC-AR bank, https://www.cdc.gov/drugresistance/resistance-bank/index.html) and 8 C. auris isolates from New York in 2016 comprising clades I and II. §MALDI-TOF MS, research use only library with 3 C. auris entries. ¶BD Phoenix Automated Microbiology System (BD Diagnostics, Sparks, MD, USA). #RapID YEAST PLUS System (Thermo Fisher Scientific, Waltham, MA, USA).
Antifungal susceptibility data for first Candida auris isolates from 51 clinical cases, New York, USA, 2013–2017*
| Antifungal | Tentative resistance breakpoint ( | MIC50† | MIC range† | No. (%) resistant |
|---|---|---|---|---|
| Fluconazole | >256 | 8.00 to | 50 (98) | |
| Itraconazole | NA | 0.500 | 0.25–1.00 | NA |
| Voriconazole | NA | 2.000 | 0.50–4.00 | NA |
| Posaconazole | NA | 0.250 | 0.12–0.50 | NA |
| Isavuconazole | NA | 0.500 | 0.25–2.00 | NA |
| Caspofungin | 0.060 | 0.03–0.25 | 0 | |
| Micafungin | 0.120 | 0.06–0.25 | 0 | |
| Anidulafungin | 0.250 | 0.12–0.50 | 0 | |
| Amphotericin B | 1.500 | 0.50–4.00 | 15 (29) | |
| Flucytosine | NA | 0.125 | 0.125–0.25 | NA |
*NA, not available. †MICs for azoles and echinocandins are defined as the lowest drug concentration that caused 50% growth inhibition compared with the drug-free controls; MICs for amphotericin B and flucytosine are defined as the lowest concentration at which there was 100% growth inhibition. MIC50 was defined as the MIC at which >50% of the isolates of C. auris tested were inhibited.