| Literature DB >> 30225124 |
Alan H Haines1, David L Hughes1.
Abstract
The title salt, Na+·C6H13O9S- [systematic name: sodium (1S,2S,3S,4R,5R)-1,2,3,4,5,6-hexa-hydroxy-hexane-1-sulfonate], is formed by reaction of d-mannose with sodium bis-ulfite (sodium hydrogen sulfite) in water. The anion has an open-chain structure with the S atom and the C atoms of the carbohydrate chain forming an essentially planar zigzag chain in which the absolute values of the torsion angles lie between 173.6 (2) and 179.9 (3)°. The sodium cations are penta--coordinated by O atoms, with one link to a carbohydrate O atom and four to O atoms of sulfonate residues in separate anions, thus creating a three-dimensional network. The carbohydrate anions are arranged in a head (-SO3-) to head (-SO3-) arrangement, thereby forming two parallel sheets linked through coordination to sodium ions, with each sheet containing inter-molecular hydrogen bonds between the anionic residues. Unusually, the double sheets are not connected to neighbouring sets of double sheets, either by ion coordination or inter-molecular hydrogen bonding.Entities:
Keywords: crystal structure; d-mannose bisulfite adduct; sodium hydrogen sulfite; sodium metabisulfite
Year: 2018 PMID: 30225124 PMCID: PMC6127687 DOI: 10.1107/S2056989018011556
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1View of the d-mannose–NaHSO3 adduct, indicating the atom-numbering scheme. All sodium coordination contacts and hydrogen bonds involving the atoms of the sugar adduct are indicated. Displacement ellipsoids are drawn at the 50% probability level. Symmetry codes: (1) 1 − x, y − , 2 − z; (2) 1 + x, y − 1, z; (3) x, y − 1, z; (4) x − 1, y − 1, z; (5) 1 + x, y, z; (6) x − 1, y, z; (7) 1 − x, + y, 2 − z; (8) 1 + x, 1 + y, z; (9) x, 1 + y, z; (10) x − 1, 1 + y, z.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.81 (3) | 1.92 (4) | 2.693 (4) | 160 (8) |
| O2—H2 | 0.81 (3) | 2.36 (5) | 2.828 (3) | 118 (5) |
| O2—H2 | 0.81 (3) | 2.08 (4) | 2.745 (4) | 140 (5) |
| O3—H3 | 0.81 (3) | 2.32 (7) | 2.838 (3) | 123 (7) |
| O3—H3 | 0.81 (3) | 2.11 (6) | 2.743 (4) | 136 (7) |
| O4—H4 | 0.82 (3) | 1.87 (3) | 2.692 (3) | 179 (8) |
| O5—H5 | 0.80 (3) | 1.91 (3) | 2.704 (4) | 169 (6) |
| O6—H6 | 0.81 (3) | 2.00 (4) | 2.753 (4) | 154 (6) |
| O6—H6 | 0.81 (3) | 2.45 (6) | 2.853 (4) | 112 (5) |
Symmetry codes: (i) ; (ii) ; (v) ; (vi) .
Figure 2View down the a axis of the crystal packing.
Selected bond lengths (Å)
| Na—O11i | 2.293 (3) | Na—O1 | 2.386 (3) |
| Na—O12ii | 2.328 (3) | Na—O13iv | 2.421 (3) |
| Na—O11iii | 2.370 (3) | Na—O12iii | 2.757 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 3View looking along the all-trans sugar chain and neighbouring chains, all pointing in the same direction. Displacement ellipsoids are shown at the 30% probability level. Symmetry codes are defined as for Fig. 1 ▸.
Figure 4View looking along the all-trans sugar chain and neighbouring chains in the d-mannose–potassium bisulfite adduct; adjacent chains point in opposing directions. Atom coordinates were taken from the CCDC deposition, code 172060 (Cole et al., 2001 ▸). Atoms are represented by small spheres of arbitrary radii. Symmetry codes: (2) 1 − x, + y, −z; (4) 1 + x, y, z; (5) 1 − x, y − , −z; (7) x, y, z − 1; (8) 1 − x, + y, 1 − z; (9) −x, + y, −z; (11) 1 − x, y − , 1 − z; (12) −x, y − , −z.
Experimental details
| Crystal data | |
| Chemical formula | Na+·C6H13NaO9S− |
|
| 284.21 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 140 |
|
| 4.8744 (2), 5.0042 (2), 21.0759 (10) |
| β (°) | 93.867 (4) |
|
| 512.92 (4) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.40 |
| Crystal size (mm) | 0.52 × 0.20 × 0.04 |
| Data collection | |
| Diffractometer | Oxford Diffraction Xcalibur 3/Sapphire3 CCD |
| Absorption correction | Multi-scan ( |
|
| 0.618, 1.000 |
| No. of measured, independent and observed [ | 9424, 2972, 2926 |
|
| 0.030 |
| (sin θ/λ)max (Å−1) | 0.703 |
| Refinement | |
|
| 0.039, 0.093, 1.16 |
| No. of reflections | 2972 |
| No. of parameters | 206 |
| No. of restraints | 7 |
| H-atom treatment | All H-atom parameters refined |
| Δρmax, Δρmin (e Å−3) | 0.49, −0.45 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.04 (4) |
Computer programs: CrysAlis PRO (Agilent, 2014 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014/7 (Sheldrick, 2015b ▸), ORTEP (Johnson, 1976 ▸) and ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸).
| Na+·C6H13NaO9S− | |
| Monoclinic, | Mo |
| Cell parameters from 4715 reflections | |
| θ = 3.9–32.5° | |
| µ = 0.40 mm−1 | |
| β = 93.867 (4)° | |
| Plate, colourless | |
| 0.52 × 0.20 × 0.04 mm |
| Oxford Diffraction Xcalibur 3/Sapphire3 CCD diffractometer | 2972 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2926 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.0050 pixels mm-1 | θmax = 30.0°, θmin = 3.9° |
| Thin slice φ and ω scans | |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014) | |
| 9424 measured reflections |
| Refinement on | Hydrogen site location: difference Fourier map |
| Least-squares matrix: full | All H-atom parameters refined |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.49 e Å−3 | |
| 2972 reflections | Δρmin = −0.44 e Å−3 |
| 206 parameters | Absolute structure: Flack |
| 7 restraints | Absolute structure parameter: 0.04 (4) |
| Primary atom site location: dual |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.5658 (7) | 0.4844 (7) | 0.83763 (16) | 0.0099 (6) | |
| O1 | 0.4257 (5) | 0.2507 (5) | 0.85501 (12) | 0.0124 (5) | |
| C2 | 0.7379 (7) | 0.4250 (7) | 0.78081 (16) | 0.0092 (6) | |
| O2 | 0.9236 (5) | 0.2083 (5) | 0.79422 (12) | 0.0112 (5) | |
| C3 | 0.5507 (7) | 0.3570 (7) | 0.72169 (16) | 0.0103 (6) | |
| O3 | 0.3628 (5) | 0.5738 (6) | 0.70848 (11) | 0.0124 (5) | |
| C4 | 0.7176 (7) | 0.2973 (7) | 0.66432 (16) | 0.0106 (6) | |
| O4 | 0.8619 (5) | 0.5330 (5) | 0.64719 (12) | 0.0132 (5) | |
| C5 | 0.5343 (7) | 0.2160 (7) | 0.60581 (16) | 0.0121 (6) | |
| O5 | 0.3884 (5) | −0.0177 (5) | 0.62226 (13) | 0.0149 (5) | |
| C6 | 0.6989 (8) | 0.1565 (7) | 0.54832 (17) | 0.0142 (7) | |
| O6 | 0.8875 (5) | −0.0609 (5) | 0.55969 (13) | 0.0150 (5) | |
| S1 | 0.77100 (15) | 0.60171 (15) | 0.90636 (4) | 0.00914 (16) | |
| O11 | 0.5782 (5) | 0.7211 (6) | 0.94817 (12) | 0.0139 (5) | |
| O12 | 0.9110 (5) | 0.3741 (5) | 0.93700 (12) | 0.0142 (5) | |
| O13 | 0.9575 (5) | 0.7966 (5) | 0.88046 (12) | 0.0125 (5) | |
| Na | 0.2652 (3) | 0.0627 (3) | 0.94976 (6) | 0.0129 (3) | |
| H1 | 0.436 (10) | 0.615 (13) | 0.825 (2) | 0.024 (13)* | |
| H2 | 0.832 (11) | 0.605 (16) | 0.776 (3) | 0.037 (15)* | |
| H3 | 0.412 (9) | 0.198 (9) | 0.732 (2) | 0.007 (10)* | |
| H4 | 0.839 (8) | 0.167 (8) | 0.6749 (19) | 0.002 (9)* | |
| H5 | 0.377 (10) | 0.363 (11) | 0.595 (2) | 0.020 (13)* | |
| H61 | 0.800 (9) | 0.326 (9) | 0.5382 (19) | 0.004 (10)* | |
| H62 | 0.588 (9) | 0.122 (11) | 0.511 (2) | 0.015 (11)* | |
| H1O | 0.281 (8) | 0.275 (15) | 0.834 (3) | 0.045 (18)* | |
| H2O | 0.857 (10) | 0.118 (11) | 0.821 (2) | 0.025 (13)* | |
| H3O | 0.458 (14) | 0.672 (14) | 0.689 (3) | 0.08 (3)* | |
| H4O | 1.016 (7) | 0.543 (16) | 0.666 (3) | 0.05 (2)* | |
| H5O | 0.246 (8) | −0.013 (12) | 0.601 (2) | 0.037 (17)* | |
| H6O | 0.829 (11) | −0.166 (10) | 0.585 (2) | 0.033 (16)* |
| C1 | 0.0066 (14) | 0.0104 (15) | 0.0125 (15) | −0.0002 (11) | −0.0005 (11) | 0.0021 (11) |
| O1 | 0.0092 (11) | 0.0132 (12) | 0.0146 (12) | −0.0038 (9) | 0.0000 (9) | 0.0016 (9) |
| C2 | 0.0068 (13) | 0.0078 (14) | 0.0130 (14) | −0.0009 (11) | −0.0001 (11) | 0.0005 (11) |
| O2 | 0.0077 (11) | 0.0113 (11) | 0.0145 (11) | 0.0026 (9) | −0.0005 (9) | 0.0014 (9) |
| C3 | 0.0094 (14) | 0.0106 (15) | 0.0108 (14) | −0.0007 (11) | −0.0013 (11) | −0.0001 (11) |
| O3 | 0.0094 (10) | 0.0124 (12) | 0.0152 (11) | 0.0009 (10) | −0.0010 (8) | 0.0033 (10) |
| C4 | 0.0090 (14) | 0.0105 (15) | 0.0122 (14) | 0.0013 (12) | 0.0005 (11) | 0.0017 (11) |
| O4 | 0.0086 (11) | 0.0134 (12) | 0.0173 (12) | −0.0033 (9) | −0.0019 (9) | 0.0022 (9) |
| C5 | 0.0120 (15) | 0.0113 (15) | 0.0129 (15) | −0.0011 (12) | −0.0006 (12) | 0.0012 (12) |
| O5 | 0.0117 (12) | 0.0154 (13) | 0.0171 (12) | −0.0043 (10) | −0.0023 (9) | 0.0032 (10) |
| C6 | 0.0164 (16) | 0.0139 (18) | 0.0118 (14) | 0.0017 (12) | −0.0016 (12) | 0.0001 (11) |
| O6 | 0.0133 (12) | 0.0151 (14) | 0.0167 (13) | 0.0004 (10) | 0.0024 (9) | 0.0002 (10) |
| S1 | 0.0081 (3) | 0.0080 (3) | 0.0112 (3) | 0.0010 (3) | −0.0003 (2) | −0.0002 (3) |
| O11 | 0.0138 (12) | 0.0150 (12) | 0.0128 (11) | 0.0059 (10) | 0.0007 (9) | −0.0018 (10) |
| O12 | 0.0150 (12) | 0.0093 (11) | 0.0176 (12) | 0.0038 (9) | −0.0033 (9) | 0.0012 (9) |
| O13 | 0.0104 (11) | 0.0100 (11) | 0.0171 (12) | −0.0031 (9) | −0.0002 (9) | 0.0000 (9) |
| Na | 0.0122 (6) | 0.0123 (7) | 0.0138 (6) | 0.0036 (5) | −0.0006 (5) | −0.0009 (5) |
| Na—O11i | 2.293 (3) | O4—H4O | 0.82 (3) |
| Na—O12ii | 2.328 (3) | C5—O5 | 1.424 (4) |
| Na—O11iii | 2.370 (3) | C5—C6 | 1.527 (5) |
| Na—O1 | 2.386 (3) | C5—H5 | 1.08 (5) |
| Na—O13iv | 2.421 (3) | O5—H5O | 0.80 (3) |
| Na—O12iii | 2.757 (3) | C6—O6 | 1.434 (4) |
| C1—O1 | 1.415 (4) | C6—H61 | 1.01 (4) |
| C1—C2 | 1.537 (5) | C6—H62 | 0.94 (4) |
| C1—S1 | 1.802 (3) | O6—H6O | 0.81 (3) |
| C1—H1 | 0.94 (6) | S1—O12 | 1.456 (3) |
| O1—Na | 2.386 (3) | S1—O11 | 1.459 (3) |
| O1—H1O | 0.81 (3) | S1—O13 | 1.464 (3) |
| C2—O2 | 1.429 (4) | S1—Nav | 3.0557 (16) |
| C2—C3 | 1.532 (4) | O11—Navi | 2.293 (3) |
| C2—H2 | 1.02 (8) | O11—Nav | 2.370 (3) |
| O2—H2O | 0.81 (3) | O12—Navii | 2.328 (3) |
| C3—O3 | 1.435 (4) | O12—Nav | 2.757 (3) |
| C3—C4 | 1.532 (5) | O13—Naviii | 2.421 (3) |
| C3—H3 | 1.08 (4) | Na—S1iii | 3.0557 (16) |
| O3—H3O | 0.81 (3) | Na—Nav | 3.915 (2) |
| C4—O4 | 1.432 (4) | Na—Naiii | 3.915 (2) |
| C4—C5 | 1.529 (5) | Na—H1O | 2.66 (6) |
| C4—H4 | 0.90 (4) | ||
| O1—C1—C2 | 109.9 (3) | C1—S1—Nav | 135.30 (11) |
| O1—C1—S1 | 108.2 (2) | S1—O11—Navi | 140.39 (16) |
| C2—C1—S1 | 112.8 (2) | S1—O11—Nav | 103.31 (14) |
| O1—C1—H1 | 109 (3) | Navi—O11—Nav | 114.20 (11) |
| C2—C1—H1 | 109 (3) | S1—O12—Navii | 153.71 (18) |
| S1—C1—H1 | 109 (3) | S1—O12—Nav | 87.25 (12) |
| C1—O1—Na | 137.2 (2) | Navii—O12—Nav | 113.65 (10) |
| C1—O1—H1O | 99 (5) | S1—O13—Naviii | 121.11 (15) |
| Na—O1—H1O | 101 (5) | O11i—Na—O12ii | 170.53 (12) |
| O2—C2—C3 | 109.1 (3) | O11i—Na—O11iii | 95.09 (8) |
| O2—C2—C1 | 111.4 (3) | O12ii—Na—O11iii | 94.13 (11) |
| C3—C2—C1 | 110.5 (3) | O11i—Na—O1 | 91.47 (10) |
| O2—C2—H2 | 114 (3) | O12ii—Na—O1 | 85.52 (10) |
| C3—C2—H2 | 111 (3) | O11iii—Na—O1 | 121.61 (11) |
| C1—C2—H2 | 101 (3) | O11i—Na—O13iv | 88.09 (10) |
| C2—O2—H2O | 106 (4) | O12ii—Na—O13iv | 82.76 (10) |
| O3—C3—C4 | 111.1 (3) | O11iii—Na—O13iv | 151.65 (11) |
| O3—C3—C2 | 109.1 (3) | O1—Na—O13iv | 86.37 (10) |
| C4—C3—C2 | 111.5 (3) | O11i—Na—O12iii | 90.22 (10) |
| O3—C3—H3 | 101 (2) | O12ii—Na—O12iii | 93.28 (8) |
| C4—C3—H3 | 113 (2) | O11iii—Na—O12iii | 55.17 (9) |
| C2—C3—H3 | 111 (2) | O1—Na—O12iii | 176.51 (11) |
| C3—O3—H3O | 100 (6) | O13iv—Na—O12iii | 96.74 (10) |
| O4—C4—C5 | 106.6 (3) | O11i—Na—S1iii | 98.35 (8) |
| O4—C4—C3 | 109.5 (3) | O12ii—Na—S1iii | 88.84 (8) |
| C5—C4—C3 | 112.1 (3) | O11iii—Na—S1iii | 27.68 (7) |
| O4—C4—H4 | 109 (3) | O1—Na—S1iii | 148.15 (9) |
| C5—C4—H4 | 110 (3) | O13iv—Na—S1iii | 123.98 (8) |
| C3—C4—H4 | 109 (3) | O12iii—Na—S1iii | 28.43 (6) |
| C4—O4—H4O | 112 (5) | O11i—Na—Nav | 96.85 (9) |
| O5—C5—C6 | 109.3 (3) | O12ii—Na—Nav | 92.10 (7) |
| O5—C5—C4 | 107.3 (3) | O11iii—Na—Nav | 32.29 (7) |
| C6—C5—C4 | 112.5 (3) | O1—Na—Nav | 89.32 (8) |
| O5—C5—H5 | 105 (3) | O13iv—Na—Nav | 173.53 (8) |
| C6—C5—H5 | 112 (3) | O12iii—Na—Nav | 87.45 (8) |
| C4—C5—H5 | 111 (3) | S1iii—Na—Nav | 59.55 (4) |
| C5—O5—H5O | 105 (4) | O11i—Na—Naiii | 33.52 (6) |
| O6—C6—C5 | 112.4 (3) | O12ii—Na—Naiii | 153.15 (10) |
| O6—C6—H61 | 111 (2) | O11iii—Na—Naiii | 65.29 (9) |
| C5—C6—H61 | 107 (2) | O1—Na—Naiii | 119.46 (9) |
| O6—C6—H62 | 109 (3) | O13iv—Na—Naiii | 106.89 (7) |
| C5—C6—H62 | 114 (3) | O12iii—Na—Naiii | 61.18 (7) |
| H61—C6—H62 | 104 (4) | S1iii—Na—Naiii | 64.84 (4) |
| C6—O6—H6O | 111 (4) | Nav—Na—Naiii | 79.45 (5) |
| O12—S1—O11 | 110.74 (16) | O11i—Na—H1O | 102.9 (13) |
| O12—S1—O13 | 113.71 (16) | O12ii—Na—H1O | 72.2 (12) |
| O11—S1—O13 | 113.22 (16) | O11iii—Na—H1O | 132.0 (16) |
| O12—S1—C1 | 108.65 (16) | O1—Na—H1O | 17.4 (8) |
| O11—S1—C1 | 105.88 (16) | O13iv—Na—H1O | 74.0 (14) |
| O13—S1—C1 | 104.03 (15) | O12iii—Na—H1O | 163.4 (9) |
| O12—S1—Nav | 64.32 (11) | S1iii—Na—H1O | 152.7 (17) |
| O11—S1—Nav | 49.00 (11) | Nav—Na—H1O | 100.8 (14) |
| O13—S1—Nav | 119.44 (11) | Naiii—Na—H1O | 134.2 (11) |
| C2—C1—O1—Na | 150.0 (2) | C2—C1—S1—O11 | 163.8 (2) |
| S1—C1—O1—Na | 26.4 (4) | O1—C1—S1—O13 | 166.0 (2) |
| O1—C1—C2—O2 | −55.8 (3) | C2—C1—S1—O13 | 44.2 (3) |
| S1—C1—C2—O2 | 65.0 (3) | O1—C1—S1—Nav | −27.4 (3) |
| O1—C1—C2—C3 | 65.6 (3) | C2—C1—S1—Nav | −149.19 (18) |
| S1—C1—C2—C3 | −173.6 (2) | O12—S1—O11—Navi | −179.4 (2) |
| O2—C2—C3—O3 | 179.6 (3) | O13—S1—O11—Navi | 51.6 (3) |
| C1—C2—C3—O3 | 56.8 (3) | C1—S1—O11—Navi | −61.8 (3) |
| O2—C2—C3—C4 | −57.3 (3) | Nav—S1—O11—Navi | 161.2 (3) |
| C1—C2—C3—C4 | 179.9 (3) | O12—S1—O11—Nav | 19.44 (19) |
| O3—C3—C4—O4 | 57.3 (3) | O13—S1—O11—Nav | −109.62 (15) |
| C2—C3—C4—O4 | −64.6 (3) | C1—S1—O11—Nav | 137.03 (14) |
| O3—C3—C4—C5 | −60.8 (4) | O11—S1—O12—Navii | −160.2 (4) |
| C2—C3—C4—C5 | 177.2 (3) | O13—S1—O12—Navii | −31.4 (4) |
| O4—C4—C5—O5 | −179.7 (3) | C1—S1—O12—Navii | 83.9 (4) |
| C3—C4—C5—O5 | −59.9 (4) | Nav—S1—O12—Navii | −144.0 (4) |
| O4—C4—C5—C6 | 60.0 (4) | O11—S1—O12—Nav | −16.19 (16) |
| C3—C4—C5—C6 | 179.9 (3) | O13—S1—O12—Nav | 112.62 (14) |
| O5—C5—C6—O6 | −57.8 (4) | C1—S1—O12—Nav | −132.07 (12) |
| C4—C5—C6—O6 | 61.2 (4) | O12—S1—O13—Naviii | −67.7 (2) |
| O1—C1—S1—O12 | 44.6 (3) | O11—S1—O13—Naviii | 59.9 (2) |
| C2—C1—S1—O12 | −77.2 (3) | C1—S1—O13—Naviii | 174.31 (16) |
| O1—C1—S1—O11 | −74.4 (3) | Nav—S1—O13—Naviii | 5.1 (2) |
| H··· | ||||
| O1—H1 | 0.81 (3) | 1.92 (4) | 2.693 (4) | 160 (8) |
| O2—H2 | 0.81 (3) | 2.36 (5) | 2.828 (3) | 118 (5) |
| O2—H2 | 0.81 (3) | 2.08 (4) | 2.745 (4) | 140 (5) |
| O3—H3 | 0.81 (3) | 2.32 (7) | 2.838 (3) | 123 (7) |
| O3—H3 | 0.81 (3) | 2.11 (6) | 2.743 (4) | 136 (7) |
| O4—H4 | 0.82 (3) | 1.87 (3) | 2.692 (3) | 179 (8) |
| O5—H5 | 0.80 (3) | 1.91 (3) | 2.704 (4) | 169 (6) |
| O6—H6 | 0.81 (3) | 2.00 (4) | 2.753 (4) | 154 (6) |
| O6—H6 | 0.81 (3) | 2.45 (6) | 2.853 (4) | 112 (5) |