| Literature DB >> 30225119 |
Mehmet Akkurt1, Abel M Maharramov2, Gulnara Sh Duruskari2, Flavien A A Toze3, Ali N Khalilov2.
Abstract
In the cation of the title salt, C15H15N4S+·Br-·H2O, the central thia-zolidine ring adopts an envelope conformation with puckering parameters Q(2) = 0.279 (4) Å and φ(2) = 222.5 (9)°. The mean plane of the thia-zolidine ring makes dihedral angles of 12.4 (2) and 66.8 (3)° with the pyridine and phenyl rings, respectively. The pyridine ring in the title mol-ecule is essentially planar (r.m.s deviation = 0.005 Å). In the crystal, the cations, anions and water mol-ecules are linked into a three-dimensional network, which forms cross layers parallel to the (120) and (20) planes via O-H⋯Br, N-H⋯Br and N-H⋯N hydrogen bonds. C-H⋯π inter-actions also help in the stabilization of the mol-ecular packing. Hirshfeld surface analysis and 2D (two-dimensional) fingerprint plots indicate that the most important contributions to the crystal packing are from H⋯H (35.5%), C⋯H/H⋯C (23.9%), Br⋯H/H⋯Br (16.4%), N⋯H/H⋯N (10.6%) and S⋯H/H⋯S (7.9%) inter-actions.Entities:
Keywords: Hirshfeld surface analysis; charge-assisted hydrogen bonding; crystal structure; pyridine ring; thiazolidine ring
Year: 2018 PMID: 30225119 PMCID: PMC6127695 DOI: 10.1107/S2056989018011155
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title salt. Displacement ellipsoids are drawn at the 30% probability level. H atoms are shown as spheres of arbitrary radius.
Figure 2A view of the intermolecular hydrogen bonds of the title compound along the a axis.
Figure 3A view of the packing and intermolecular hydrogen bonding of the title compound along the c axis.
Hydrogen-bond geometry (Å, °)
Cg2 and Cg3 are the centroids of the N4/C5–C9 pyridine and C10–C15 phenyl ring, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.95 | 2.39 | 3.333 (4) | 169 |
| O1—H1 | 0.95 | 2.56 | 3.427 (5) | 152 |
| N3—H3 | 0.90 | 2.45 | 3.333 (4) | 167 |
| N3—H3 | 0.90 | 1.99 | 2.840 (6) | 158 |
| C9—H9 | 0.93 | 2.96 | 3.650 (5) | 132 |
| C12—H12 | 0.93 | 2.82 | 3.565 (8) | 137 |
| C15—H15 | 0.93 | 2.80 | 3.548 (6) | 135 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 4Hirshfeld surface of the title compound mapped over d norm.
Figure 5The two-dimensional fingerprint plots of the title compound, showing (a) all interactions, and delineated into (b) H⋯H, (c) C⋯H/H⋯C, (d) Br⋯H/H⋯Br, (e) N⋯H/H⋯N and (f) S⋯H/H⋯S interactions [d e and d i represent the distances from a point on the Hirshfeld surface to the nearest atoms outside (external) and inside (internal) the surface, respectively].
Percentage contributions of interatomic contacts to the Hirshfeld surface for the title salt
| Contact | Percentage contribution |
|---|---|
| H⋯H | 35.5 |
| C⋯H/H⋯C | 23.9 |
| Br⋯H/H⋯Br | 16.4 |
| N⋯H/H⋯N | 10.6 |
| S⋯H/H⋯S | 7.9 |
| Br⋯C/C⋯Br | 1.1 |
| Br⋯N/N⋯Br | 1.0 |
| Br⋯S/S⋯Br | 0.6 |
| C⋯N/N⋯C | 0.3 |
| N⋯N/N⋯N | 0.1 |
Experimental details
| Crystal data | |
| Chemical formula | C15H15N4S+·Br−·H2O |
|
| 381.30 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 5.8515 (8), 7.5304 (10), 18.859 (3) |
| β (°) | 93.979 (5) |
|
| 829.0 (2) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 2.61 |
| Crystal size (mm) | 0.19 × 0.15 × 0.14 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.623, 0.698 |
| No. of measured, independent and observed [ | 12061, 3373, 3107 |
|
| 0.076 |
| (sin θ/λ)max (Å−1) | 0.626 |
| Refinement | |
|
| 0.037, 0.087, 1.08 |
| No. of reflections | 3373 |
| No. of parameters | 199 |
| No. of restraints | 1 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.49, −0.47 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.004 (8) |
Computer programs: APEX2 and SAINT (Bruker, 2007 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).
| C15H15N4S+·Br−·H2O | |
| Monoclinic, | Mo |
| Cell parameters from 6867 reflections | |
| θ = 2.9–26.4° | |
| µ = 2.61 mm−1 | |
| β = 93.979 (5)° | |
| Block, colorless | |
| 0.19 × 0.15 × 0.14 mm |
| Bruker APEXII CCD diffractometer | 3107 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2007) | θmax = 26.4°, θmin = 2.9° |
| 12061 measured reflections | |
| 3373 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3373 reflections | Δρmax = 0.49 e Å−3 |
| 199 parameters | Δρmin = −0.47 e Å−3 |
| 1 restraint | Absolute structure: Flack |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.004 (8) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Br1 | 0.00107 (9) | 0.87805 (8) | 0.76086 (3) | 0.05140 (19) | |
| O1 | 0.4881 (7) | 0.6571 (7) | 0.7445 (3) | 0.0670 (13) | |
| H1D | 0.619040 | 0.714648 | 0.766487 | 0.100* | |
| H1C | 0.362040 | 0.733228 | 0.751357 | 0.100* | |
| S1 | 0.4339 (2) | 0.15399 (19) | 0.67953 (6) | 0.0382 (3) | |
| N1 | 0.8263 (6) | 0.3319 (5) | 0.8366 (2) | 0.0295 (9) | |
| N2 | 0.7239 (7) | 0.2983 (5) | 0.7699 (2) | 0.0303 (8) | |
| N3 | 0.4501 (6) | 0.1215 (6) | 0.8202 (2) | 0.0355 (9) | |
| H3A | 0.328282 | 0.049581 | 0.812009 | 0.043* | |
| H3B | 0.512382 | 0.129791 | 0.865099 | 0.043* | |
| N4 | 1.3503 (8) | 0.5477 (6) | 1.0413 (2) | 0.0411 (10) | |
| C1 | 0.8150 (8) | 0.3485 (7) | 0.7026 (2) | 0.0355 (11) | |
| H1A | 0.942871 | 0.272508 | 0.692765 | 0.043* | |
| H1B | 0.867805 | 0.470588 | 0.704580 | 0.043* | |
| C2 | 0.6215 (9) | 0.3270 (6) | 0.6453 (3) | 0.0367 (11) | |
| H2A | 0.535751 | 0.438691 | 0.640770 | 0.044* | |
| C3 | 0.5413 (7) | 0.1933 (6) | 0.7656 (2) | 0.0280 (9) | |
| C4 | 1.0129 (8) | 0.4175 (6) | 0.8403 (3) | 0.0342 (11) | |
| H4A | 1.078821 | 0.452819 | 0.799119 | 0.041* | |
| C5 | 1.1255 (8) | 0.4610 (6) | 0.9111 (2) | 0.0303 (9) | |
| C6 | 1.3363 (9) | 0.5471 (7) | 0.9143 (3) | 0.0399 (12) | |
| H6A | 1.405181 | 0.577708 | 0.872999 | 0.048* | |
| C7 | 1.4407 (9) | 0.5859 (8) | 0.9808 (3) | 0.0415 (12) | |
| H7A | 1.582539 | 0.642081 | 0.982961 | 0.050* | |
| C8 | 1.1475 (10) | 0.4651 (8) | 1.0373 (3) | 0.0421 (12) | |
| H8A | 1.081980 | 0.437142 | 1.079457 | 0.051* | |
| C9 | 1.0312 (8) | 0.4194 (6) | 0.9743 (3) | 0.0349 (11) | |
| H9A | 0.890877 | 0.361247 | 0.974094 | 0.042* | |
| C10 | 0.6939 (9) | 0.2728 (7) | 0.5720 (3) | 0.0354 (11) | |
| C11 | 0.8870 (10) | 0.1764 (8) | 0.5602 (3) | 0.0501 (14) | |
| H11A | 0.977907 | 0.131751 | 0.598504 | 0.060* | |
| C12 | 0.9462 (10) | 0.1458 (11) | 0.4924 (5) | 0.064 (2) | |
| H12A | 1.081948 | 0.086515 | 0.485002 | 0.077* | |
| C13 | 0.8064 (13) | 0.2022 (10) | 0.4350 (3) | 0.0626 (19) | |
| H13A | 0.846758 | 0.180147 | 0.389002 | 0.075* | |
| C14 | 0.6057 (15) | 0.2916 (9) | 0.4462 (3) | 0.0610 (19) | |
| H14A | 0.508677 | 0.327949 | 0.407801 | 0.073* | |
| C15 | 0.5505 (11) | 0.3266 (7) | 0.5146 (3) | 0.0450 (13) | |
| H15A | 0.415794 | 0.386965 | 0.522268 | 0.054* |
| Br1 | 0.0357 (2) | 0.0535 (3) | 0.0647 (4) | 0.0010 (3) | 0.0019 (2) | −0.0076 (4) |
| O1 | 0.059 (3) | 0.059 (3) | 0.084 (4) | 0.016 (3) | 0.013 (2) | −0.008 (3) |
| S1 | 0.0326 (5) | 0.0560 (8) | 0.0249 (5) | −0.0080 (6) | −0.0050 (4) | −0.0042 (5) |
| N1 | 0.0331 (19) | 0.029 (2) | 0.0250 (18) | −0.0004 (14) | −0.0079 (14) | −0.0049 (13) |
| N2 | 0.0325 (19) | 0.0329 (19) | 0.0245 (19) | −0.0024 (16) | −0.0055 (15) | −0.0013 (15) |
| N3 | 0.0296 (18) | 0.051 (3) | 0.0252 (19) | −0.0036 (19) | −0.0033 (15) | 0.0017 (18) |
| N4 | 0.043 (2) | 0.043 (3) | 0.036 (2) | 0.003 (2) | −0.0098 (18) | −0.0099 (19) |
| C1 | 0.037 (2) | 0.042 (3) | 0.028 (2) | −0.002 (2) | −0.0003 (17) | −0.001 (2) |
| C2 | 0.040 (2) | 0.034 (3) | 0.035 (3) | 0.0068 (19) | −0.002 (2) | −0.0006 (18) |
| C3 | 0.0238 (19) | 0.031 (2) | 0.028 (2) | 0.0050 (18) | −0.0030 (16) | −0.0005 (18) |
| C4 | 0.038 (2) | 0.037 (3) | 0.027 (2) | −0.0021 (19) | −0.0028 (18) | −0.0039 (18) |
| C5 | 0.032 (2) | 0.030 (2) | 0.029 (2) | −0.0017 (18) | −0.0043 (18) | −0.0047 (18) |
| C6 | 0.039 (3) | 0.046 (3) | 0.034 (3) | −0.009 (2) | 0.000 (2) | −0.006 (2) |
| C7 | 0.031 (2) | 0.047 (3) | 0.045 (3) | −0.003 (2) | −0.009 (2) | −0.011 (2) |
| C8 | 0.050 (3) | 0.047 (3) | 0.030 (3) | 0.000 (2) | 0.004 (2) | −0.004 (2) |
| C9 | 0.033 (2) | 0.037 (3) | 0.035 (2) | −0.0021 (18) | −0.0004 (18) | −0.0032 (18) |
| C10 | 0.038 (2) | 0.040 (3) | 0.027 (2) | −0.007 (2) | −0.0022 (19) | 0.0002 (19) |
| C11 | 0.044 (3) | 0.048 (3) | 0.056 (3) | 0.005 (3) | −0.014 (3) | −0.007 (3) |
| C12 | 0.045 (3) | 0.067 (4) | 0.084 (5) | −0.005 (4) | 0.018 (3) | −0.031 (4) |
| C13 | 0.093 (5) | 0.061 (4) | 0.036 (3) | −0.017 (4) | 0.026 (3) | −0.010 (3) |
| C14 | 0.103 (6) | 0.045 (3) | 0.032 (3) | −0.007 (4) | −0.019 (3) | 0.012 (2) |
| C15 | 0.051 (3) | 0.037 (3) | 0.046 (3) | 0.006 (2) | −0.005 (2) | −0.003 (2) |
| O1—H1D | 0.9500 | C5—C9 | 1.384 (7) |
| O1—H1C | 0.9500 | C5—C6 | 1.391 (7) |
| S1—C3 | 1.725 (4) | C6—C7 | 1.389 (7) |
| S1—C2 | 1.848 (5) | C6—H6A | 0.9300 |
| N1—C4 | 1.266 (6) | C7—H7A | 0.9300 |
| N1—N2 | 1.380 (5) | C8—C9 | 1.372 (7) |
| N2—C3 | 1.327 (6) | C8—H8A | 0.9300 |
| N2—C1 | 1.459 (6) | C9—H9A | 0.9300 |
| N3—C3 | 1.310 (6) | C10—C11 | 1.374 (8) |
| N3—H3A | 0.9000 | C10—C15 | 1.384 (7) |
| N3—H3B | 0.9000 | C11—C12 | 1.367 (10) |
| N4—C7 | 1.322 (8) | C11—H11A | 0.9300 |
| N4—C8 | 1.337 (8) | C12—C13 | 1.378 (11) |
| C1—C2 | 1.519 (6) | C12—H12A | 0.9300 |
| C1—H1A | 0.9700 | C13—C14 | 1.383 (11) |
| C1—H1B | 0.9700 | C13—H13A | 0.9300 |
| C2—C10 | 1.529 (7) | C14—C15 | 1.376 (9) |
| C2—H2A | 0.9800 | C14—H14A | 0.9300 |
| C4—C5 | 1.484 (6) | C15—H15A | 0.9300 |
| C4—H4A | 0.9300 | ||
| H1D—O1—H1C | 106.0 | C7—C6—C5 | 118.0 (5) |
| C3—S1—C2 | 91.2 (2) | C7—C6—H6A | 121.0 |
| C4—N1—N2 | 117.6 (4) | C5—C6—H6A | 121.0 |
| C3—N2—N1 | 117.5 (4) | N4—C7—C6 | 123.8 (5) |
| C3—N2—C1 | 116.3 (4) | N4—C7—H7A | 118.1 |
| N1—N2—C1 | 125.7 (4) | C6—C7—H7A | 118.1 |
| C3—N3—H3A | 118.3 | N4—C8—C9 | 123.4 (5) |
| C3—N3—H3B | 123.4 | N4—C8—H8A | 118.3 |
| H3A—N3—H3B | 117.9 | C9—C8—H8A | 118.3 |
| C7—N4—C8 | 117.3 (4) | C8—C9—C5 | 119.0 (5) |
| N2—C1—C2 | 106.9 (4) | C8—C9—H9A | 120.5 |
| N2—C1—H1A | 110.3 | C5—C9—H9A | 120.5 |
| C2—C1—H1A | 110.3 | C11—C10—C15 | 119.2 (5) |
| N2—C1—H1B | 110.3 | C11—C10—C2 | 124.8 (5) |
| C2—C1—H1B | 110.3 | C15—C10—C2 | 116.0 (5) |
| H1A—C1—H1B | 108.6 | C12—C11—C10 | 120.4 (6) |
| C1—C2—C10 | 115.6 (4) | C12—C11—H11A | 119.8 |
| C1—C2—S1 | 104.9 (3) | C10—C11—H11A | 119.8 |
| C10—C2—S1 | 109.6 (3) | C11—C12—C13 | 120.5 (6) |
| C1—C2—H2A | 108.8 | C11—C12—H12A | 119.8 |
| C10—C2—H2A | 108.8 | C13—C12—H12A | 119.8 |
| S1—C2—H2A | 108.8 | C12—C13—C14 | 119.6 (6) |
| N3—C3—N2 | 124.7 (4) | C12—C13—H13A | 120.2 |
| N3—C3—S1 | 121.8 (4) | C14—C13—H13A | 120.2 |
| N2—C3—S1 | 113.5 (3) | C15—C14—C13 | 119.6 (6) |
| N1—C4—C5 | 119.3 (4) | C15—C14—H14A | 120.2 |
| N1—C4—H4A | 120.3 | C13—C14—H14A | 120.2 |
| C5—C4—H4A | 120.3 | C14—C15—C10 | 120.5 (6) |
| C9—C5—C6 | 118.3 (4) | C14—C15—H15A | 119.7 |
| C9—C5—C4 | 123.1 (4) | C10—C15—H15A | 119.7 |
| C6—C5—C4 | 118.6 (4) | ||
| C4—N1—N2—C3 | 173.3 (4) | C8—N4—C7—C6 | 0.8 (8) |
| C4—N1—N2—C1 | 1.8 (7) | C5—C6—C7—N4 | −0.8 (9) |
| C3—N2—C1—C2 | 22.4 (6) | C7—N4—C8—C9 | −0.1 (8) |
| N1—N2—C1—C2 | −166.1 (4) | N4—C8—C9—C5 | −0.4 (8) |
| N2—C1—C2—C10 | −148.0 (4) | C6—C5—C9—C8 | 0.3 (7) |
| N2—C1—C2—S1 | −27.1 (5) | C4—C5—C9—C8 | −179.9 (5) |
| C3—S1—C2—C1 | 21.6 (3) | C1—C2—C10—C11 | 27.7 (7) |
| C3—S1—C2—C10 | 146.3 (4) | S1—C2—C10—C11 | −90.6 (6) |
| N1—N2—C3—N3 | 0.9 (7) | C1—C2—C10—C15 | −152.3 (5) |
| C1—N2—C3—N3 | 173.2 (5) | S1—C2—C10—C15 | 89.3 (5) |
| N1—N2—C3—S1 | −177.7 (3) | C15—C10—C11—C12 | 5.0 (9) |
| C1—N2—C3—S1 | −5.5 (5) | C2—C10—C11—C12 | −175.1 (6) |
| C2—S1—C3—N3 | 171.0 (4) | C10—C11—C12—C13 | −3.8 (11) |
| C2—S1—C3—N2 | −10.3 (4) | C11—C12—C13—C14 | 0.6 (11) |
| N2—N1—C4—C5 | 178.3 (4) | C12—C13—C14—C15 | 1.4 (10) |
| N1—C4—C5—C9 | −3.0 (7) | C13—C14—C15—C10 | −0.1 (9) |
| N1—C4—C5—C6 | 176.7 (5) | C11—C10—C15—C14 | −3.1 (9) |
| C9—C5—C6—C7 | 0.2 (8) | C2—C10—C15—C14 | 177.0 (5) |
| C4—C5—C6—C7 | −179.6 (5) |
| H··· | ||||
| O1—H1 | 0.95 | 2.39 | 3.333 (4) | 169 |
| O1—H1 | 0.95 | 2.56 | 3.427 (5) | 152 |
| N3—H3 | 0.90 | 2.45 | 3.333 (4) | 167 |
| N3—H3 | 0.90 | 1.99 | 2.840 (6) | 158 |
| C9—H9 | 0.93 | 2.96 | 3.650 (5) | 132 |
| C12—H12 | 0.93 | 2.82 | 3.565 (8) | 137 |
| C15—H15 | 0.93 | 2.80 | 3.548 (6) | 135 |