| Literature DB >> 30225111 |
Vivek C Ramani1, Rina D Shah1, Mukesh M Jotani2, Edward R T Tiekink3.
Abstract
The title compound, C16H15N5O2, adopts the shape of the letter L with the dihedral angle between the outer pyridyl rings being 78.37 (5)°; the dihedral angles between the central pyrazolyl ring (r.m.s. deviation = 0.0023 Å) and the methyl-ene-bound pyridyl and methyoxypyridyl rings are 77.68 (5) and 7.84 (10)°, respectively. Intra-molecular amide-N-H⋯N(pyrazol-yl) and pyridyl-C-H⋯O(amide) inter-actions are evident and these preclude the participation of the amide-N-H and O atoms in inter-molecular inter-actions. The most notable feature of the mol-ecular packing is the formation of linear supra-molecular chains aligned along the b-axis direction mediated by weak carbonyl-C=O⋯π(triazol-yl) inter-actions. An analysis of the calculated Hirshfeld surfaces point to the importance of H⋯H (46.4%), C⋯H (22.4%), O⋯H (11.9%) and N⋯H (11.1%) contacts in the crystal.Entities:
Keywords: Hirshfeld surface analysis; crystal structure; pyrazolyl; pyridyl
Year: 2018 PMID: 30225111 PMCID: PMC6127692 DOI: 10.1107/S2056989018011477
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I), showing displacement ellipsoids at the 50% probability level.
Intra- and intermolecular interactions (Å, °) for (I)
Cg1 is the centroid of the N1/N2/C1–C3 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N4—H4 | 0.86 (1) | 2.24 (2) | 2.6939 (18) | 113 (1) |
| C15—H15⋯O1 | 0.93 | 2.33 | 2.909 (2) | 120 |
| C10—O1⋯ | 1.22 (1) | 3.42 (1) | 3.5486 (16) | 86 (1) |
Symmetry code: (i) .
Figure 2Supramolecular association in the crystal of (I): (a) a view of the supramolecular chain along the b-axis direction sustained by carbonyl-C—O⋯π(triazolyl) interactions shown as purple dashed lines and (b) a view of the unit-cell contents shown in projection down the b axis.
Figure 3Three views of the Hirshfeld surface for (I) mapped over d norm in the range −0.093 to +1.418 a.u. highlighting (a) short interatomic O⋯H/H⋯O (yellow dashed lines) and N⋯H/H⋯N (black) contacts dashed lines, (b) C⋯C (red) and C⋯H/H⋯C (sky-blue) contacts and (c) C=O⋯π contacts (black dotted lines).
Summary of short interatomic contacts (Å) in (I)
| Contact | Distance | Symmetry operation |
|---|---|---|
| O1⋯H6 | 2.47 |
|
| N1⋯H16 | 2.58 | − |
| N3⋯H5 | 2.54 | 1 − |
| C6⋯H1 | 2.72 | 1 − |
| C5⋯C8 | 3.380 (3) |
|
Percentage contributions of interatomic contacts to the Hirshfeld surface for (I)
| Contact | Percentage contribution |
|---|---|
| H⋯H | 46.4 |
| O⋯H/H⋯O | 11.9 |
| N⋯H/H⋯N | 11.1 |
| C⋯H/H⋯C | 22.4 |
| C⋯N/N⋯C | 3.5 |
| C⋯O/O⋯C | 1.9 |
| N⋯N | 1.3 |
| C⋯C | 1.2 |
| N⋯O/O⋯N | 0.4 |
Figure 4Two views of the Hirshfeld surface mapped over the electrostatic potential in the range −0.080 to +0.044 a.u. The red and blue regions represent negative and positive electrostatic potentials, respectively.
Figure 5(a) The full two-dimensional fingerprint plot for (I) and (b)-(f) those delineated into H⋯H, O⋯H/H⋯O, N⋯H/H⋯N, C⋯H/H⋯C and C⋯C, contacts, respectively.
Experimental details
| Crystal data | |
| Chemical formula | C16H15N5O2 |
|
| 309.33 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 15.8867 (15), 4.6473 (4), 21.6740 (19) |
| β (°) | 108.623 (3) |
|
| 1516.4 (2) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.09 |
| Crystal size (mm) | 0.47 × 0.43 × 0.28 |
| Data collection | |
| Diffractometer | Rigaku SCX mini |
| Absorption correction | Multi-scan ( |
|
| 0.808, 0.974 |
| No. of measured, independent and observed [ | 14205, 3458, 2354 |
|
| 0.031 |
| (sin θ/λ)max (Å−1) | 0.649 |
| Refinement | |
|
| 0.042, 0.117, 1.02 |
| No. of reflections | 3458 |
| No. of parameters | 212 |
| No. of restraints | 1 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.13, −0.17 |
Computer programs: CrystalClear-SM Expert (Rigaku, 2011 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| C16H15N5O2 | |
| Monoclinic, | Mo |
| Cell parameters from 11059 reflections | |
| θ = 3.2–27.7° | |
| µ = 0.09 mm−1 | |
| β = 108.623 (3)° | |
| Block, colourless | |
| 0.47 × 0.43 × 0.28 mm |
| Rigaku SCX mini diffractometer | 2354 reflections with |
| Detector resolution: 6.849 pixels mm-1 | |
| ω scans | θmax = 27.5°, θmin = 3.8° |
| Absorption correction: multi-scan ( | |
| 14205 measured reflections | |
| 3458 independent reflections |
| Refinement on | 1 restraint |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3458 reflections | Δρmax = 0.13 e Å−3 |
| 212 parameters | Δρmin = −0.17 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.33267 (7) | 0.7478 (2) | 0.23734 (5) | 0.0605 (3) | |
| O2 | −0.08095 (9) | 0.9148 (4) | 0.07466 (8) | 0.1027 (5) | |
| N1 | 0.30289 (8) | 0.2514 (2) | 0.10788 (5) | 0.0434 (3) | |
| N2 | 0.36665 (8) | 0.0898 (2) | 0.09706 (5) | 0.0457 (3) | |
| N3 | 0.40561 (8) | 0.2467 (3) | −0.01587 (6) | 0.0511 (3) | |
| N4 | 0.20890 (8) | 0.6321 (3) | 0.15313 (6) | 0.0516 (3) | |
| H4N | 0.1920 (10) | 0.521 (3) | 0.1198 (6) | 0.062* | |
| N5 | 0.06549 (9) | 0.7801 (3) | 0.11608 (7) | 0.0577 (4) | |
| C1 | 0.44689 (10) | 0.1427 (3) | 0.14031 (7) | 0.0517 (4) | |
| H1 | 0.5001 | 0.0558 | 0.1415 | 0.062* | |
| C2 | 0.43609 (10) | 0.3459 (3) | 0.18194 (7) | 0.0483 (4) | |
| H2 | 0.4795 | 0.4266 | 0.2172 | 0.058* | |
| C3 | 0.34578 (9) | 0.4073 (3) | 0.16025 (6) | 0.0408 (3) | |
| C4 | 0.34470 (12) | −0.1001 (3) | 0.04122 (7) | 0.0548 (4) | |
| H4A | 0.2866 | −0.1833 | 0.0350 | 0.066* | |
| H4B | 0.3874 | −0.2563 | 0.0502 | 0.066* | |
| C5 | 0.34405 (10) | 0.0471 (3) | −0.02091 (6) | 0.0438 (3) | |
| C6 | 0.40938 (11) | 0.3653 (4) | −0.07088 (7) | 0.0567 (4) | |
| H6 | 0.4516 | 0.5076 | −0.0679 | 0.068* | |
| C7 | 0.35489 (12) | 0.2904 (4) | −0.13146 (8) | 0.0615 (5) | |
| H7 | 0.3609 | 0.3760 | −0.1686 | 0.074* | |
| C8 | 0.29151 (12) | 0.0865 (4) | −0.13579 (8) | 0.0663 (5) | |
| H8 | 0.2530 | 0.0310 | −0.1762 | 0.080* | |
| C9 | 0.28514 (11) | −0.0364 (4) | −0.07958 (7) | 0.0573 (4) | |
| H9 | 0.2417 | −0.1733 | −0.0814 | 0.069* | |
| C10 | 0.29654 (9) | 0.6120 (3) | 0.18811 (6) | 0.0442 (3) | |
| C11 | 0.14308 (10) | 0.8033 (3) | 0.16395 (7) | 0.0488 (4) | |
| C12 | −0.00155 (11) | 0.9321 (4) | 0.12181 (9) | 0.0682 (5) | |
| C13 | 0.00381 (13) | 1.1138 (4) | 0.17359 (11) | 0.0755 (5) | |
| H13 | −0.0451 | 1.2186 | 0.1755 | 0.091* | |
| C14 | 0.08339 (13) | 1.1327 (4) | 0.22134 (10) | 0.0722 (5) | |
| H14 | 0.0895 | 1.2520 | 0.2570 | 0.087* | |
| C15 | 0.15550 (12) | 0.9762 (4) | 0.21746 (8) | 0.0611 (4) | |
| H15 | 0.2104 | 0.9875 | 0.2499 | 0.073* | |
| C16 | −0.08995 (15) | 0.7152 (6) | 0.02254 (13) | 0.1148 (9) | |
| H16A | −0.0495 | 0.7665 | −0.0005 | 0.172* | |
| H16B | −0.1497 | 0.7207 | −0.0068 | 0.172* | |
| H16C | −0.0766 | 0.5245 | 0.0400 | 0.172* |
| O1 | 0.0609 (7) | 0.0742 (7) | 0.0434 (6) | −0.0007 (6) | 0.0123 (5) | −0.0163 (5) |
| O2 | 0.0550 (8) | 0.1215 (13) | 0.1194 (12) | 0.0237 (8) | 0.0108 (8) | −0.0180 (11) |
| N1 | 0.0491 (7) | 0.0441 (6) | 0.0367 (6) | 0.0006 (5) | 0.0130 (5) | 0.0019 (5) |
| N2 | 0.0561 (7) | 0.0435 (6) | 0.0385 (6) | 0.0048 (6) | 0.0166 (5) | 0.0020 (5) |
| N3 | 0.0564 (8) | 0.0524 (7) | 0.0433 (7) | 0.0002 (6) | 0.0142 (6) | 0.0009 (6) |
| N4 | 0.0473 (7) | 0.0551 (8) | 0.0505 (7) | 0.0009 (6) | 0.0129 (6) | −0.0120 (6) |
| N5 | 0.0477 (7) | 0.0609 (8) | 0.0643 (8) | 0.0031 (6) | 0.0175 (6) | −0.0004 (7) |
| C1 | 0.0482 (8) | 0.0594 (9) | 0.0465 (8) | 0.0102 (7) | 0.0139 (7) | 0.0080 (7) |
| C2 | 0.0463 (8) | 0.0567 (9) | 0.0374 (7) | 0.0026 (7) | 0.0073 (6) | 0.0039 (7) |
| C3 | 0.0462 (8) | 0.0439 (7) | 0.0312 (6) | −0.0011 (6) | 0.0109 (6) | 0.0050 (6) |
| C4 | 0.0765 (11) | 0.0416 (8) | 0.0490 (8) | 0.0004 (8) | 0.0240 (8) | −0.0025 (7) |
| C5 | 0.0505 (8) | 0.0399 (7) | 0.0428 (7) | 0.0091 (6) | 0.0175 (6) | −0.0028 (6) |
| C6 | 0.0583 (9) | 0.0605 (10) | 0.0550 (9) | 0.0030 (8) | 0.0235 (8) | 0.0070 (8) |
| C7 | 0.0692 (11) | 0.0741 (11) | 0.0438 (8) | 0.0168 (9) | 0.0215 (8) | 0.0106 (8) |
| C8 | 0.0682 (11) | 0.0806 (12) | 0.0412 (8) | 0.0107 (10) | 0.0050 (8) | −0.0063 (8) |
| C9 | 0.0570 (9) | 0.0597 (10) | 0.0525 (9) | −0.0012 (8) | 0.0138 (7) | −0.0064 (8) |
| C10 | 0.0492 (8) | 0.0478 (8) | 0.0360 (7) | −0.0035 (7) | 0.0141 (6) | 0.0024 (6) |
| C11 | 0.0493 (8) | 0.0467 (8) | 0.0545 (9) | −0.0021 (7) | 0.0222 (7) | 0.0018 (7) |
| C12 | 0.0516 (10) | 0.0708 (11) | 0.0842 (13) | 0.0081 (9) | 0.0245 (9) | 0.0051 (10) |
| C13 | 0.0673 (12) | 0.0695 (12) | 0.1041 (15) | 0.0109 (10) | 0.0478 (12) | 0.0003 (11) |
| C14 | 0.0789 (13) | 0.0668 (11) | 0.0847 (13) | −0.0001 (10) | 0.0455 (11) | −0.0141 (10) |
| C15 | 0.0621 (10) | 0.0615 (10) | 0.0648 (10) | −0.0035 (8) | 0.0274 (8) | −0.0103 (8) |
| C16 | 0.0657 (13) | 0.134 (2) | 0.1161 (19) | 0.0129 (14) | −0.0116 (13) | −0.0294 (18) |
| O1—C10 | 1.2147 (16) | C4—H4A | 0.9700 |
| O2—C12 | 1.349 (2) | C4—H4B | 0.9700 |
| O2—C16 | 1.433 (3) | C5—C9 | 1.372 (2) |
| N1—C3 | 1.3354 (17) | C6—C7 | 1.367 (2) |
| N1—N2 | 1.3404 (16) | C6—H6 | 0.9300 |
| N2—C1 | 1.3421 (18) | C7—C8 | 1.364 (3) |
| N2—C4 | 1.4476 (18) | C7—H7 | 0.9300 |
| N3—C5 | 1.3271 (18) | C8—C9 | 1.378 (2) |
| N3—C6 | 1.3321 (19) | C8—H8 | 0.9300 |
| N4—C10 | 1.3593 (18) | C9—H9 | 0.9300 |
| N4—C11 | 1.3920 (19) | C11—C15 | 1.372 (2) |
| N4—H4N | 0.859 (9) | C12—C13 | 1.385 (3) |
| N5—C12 | 1.317 (2) | C13—C14 | 1.357 (3) |
| N5—C11 | 1.338 (2) | C13—H13 | 0.9300 |
| C1—C2 | 1.355 (2) | C14—C15 | 1.382 (2) |
| C1—H1 | 0.9300 | C14—H14 | 0.9300 |
| C2—C3 | 1.3893 (19) | C15—H15 | 0.9300 |
| C2—H2 | 0.9300 | C16—H16A | 0.9600 |
| C3—C10 | 1.477 (2) | C16—H16B | 0.9600 |
| C4—C5 | 1.508 (2) | C16—H16C | 0.9600 |
| C12—O2—C16 | 118.00 (16) | C8—C7—H7 | 121.0 |
| C3—N1—N2 | 104.11 (11) | C6—C7—H7 | 121.0 |
| N1—N2—C1 | 112.18 (12) | C7—C8—C9 | 119.21 (15) |
| N1—N2—C4 | 119.62 (12) | C7—C8—H8 | 120.4 |
| C1—N2—C4 | 128.10 (13) | C9—C8—H8 | 120.4 |
| C5—N3—C6 | 117.26 (13) | C5—C9—C8 | 118.76 (16) |
| C10—N4—C11 | 129.51 (13) | C5—C9—H9 | 120.6 |
| C10—N4—H4N | 114.6 (11) | C8—C9—H9 | 120.6 |
| C11—N4—H4N | 115.8 (11) | O1—C10—N4 | 124.52 (14) |
| C12—N5—C11 | 117.15 (15) | O1—C10—C3 | 122.02 (13) |
| N2—C1—C2 | 107.38 (13) | N4—C10—C3 | 113.46 (12) |
| N2—C1—H1 | 126.3 | N5—C11—C15 | 123.41 (15) |
| C2—C1—H1 | 126.3 | N5—C11—N4 | 112.27 (13) |
| C1—C2—C3 | 104.75 (13) | C15—C11—N4 | 124.32 (15) |
| C1—C2—H2 | 127.6 | N5—C12—O2 | 119.06 (18) |
| C3—C2—H2 | 127.6 | N5—C12—C13 | 124.14 (17) |
| N1—C3—C2 | 111.57 (13) | O2—C12—C13 | 116.80 (17) |
| N1—C3—C10 | 120.24 (12) | C14—C13—C12 | 117.31 (17) |
| C2—C3—C10 | 128.18 (13) | C14—C13—H13 | 121.3 |
| N2—C4—C5 | 113.65 (12) | C12—C13—H13 | 121.3 |
| N2—C4—H4A | 108.8 | C13—C14—C15 | 120.52 (17) |
| C5—C4—H4A | 108.8 | C13—C14—H14 | 119.7 |
| N2—C4—H4B | 108.8 | C15—C14—H14 | 119.7 |
| C5—C4—H4B | 108.8 | C11—C15—C14 | 117.47 (17) |
| H4A—C4—H4B | 107.7 | C11—C15—H15 | 121.3 |
| N3—C5—C9 | 122.73 (14) | C14—C15—H15 | 121.3 |
| N3—C5—C4 | 116.68 (13) | O2—C16—H16A | 109.5 |
| C9—C5—C4 | 120.50 (14) | O2—C16—H16B | 109.5 |
| N3—C6—C7 | 123.98 (16) | H16A—C16—H16B | 109.5 |
| N3—C6—H6 | 118.0 | O2—C16—H16C | 109.5 |
| C7—C6—H6 | 118.0 | H16A—C16—H16C | 109.5 |
| C8—C7—C6 | 118.04 (15) | H16B—C16—H16C | 109.5 |
| C3—N1—N2—C1 | −0.62 (14) | C11—N4—C10—O1 | 0.4 (2) |
| C3—N1—N2—C4 | −177.19 (11) | C11—N4—C10—C3 | −179.08 (14) |
| N1—N2—C1—C2 | 0.51 (16) | N1—C3—C10—O1 | 176.69 (13) |
| C4—N2—C1—C2 | 176.71 (13) | C2—C3—C10—O1 | −2.7 (2) |
| N2—C1—C2—C3 | −0.17 (16) | N1—C3—C10—N4 | −3.79 (18) |
| N2—N1—C3—C2 | 0.50 (14) | C2—C3—C10—N4 | 176.79 (14) |
| N2—N1—C3—C10 | −179.01 (11) | C12—N5—C11—C15 | −0.3 (2) |
| C1—C2—C3—N1 | −0.21 (16) | C12—N5—C11—N4 | 179.54 (14) |
| C1—C2—C3—C10 | 179.25 (13) | C10—N4—C11—N5 | 175.29 (14) |
| N1—N2—C4—C5 | 83.78 (16) | C10—N4—C11—C15 | −4.9 (3) |
| C1—N2—C4—C5 | −92.17 (18) | C11—N5—C12—O2 | −179.95 (16) |
| C6—N3—C5—C9 | −0.7 (2) | C11—N5—C12—C13 | 0.5 (3) |
| C6—N3—C5—C4 | 175.81 (13) | C16—O2—C12—N5 | 4.2 (3) |
| N2—C4—C5—N3 | 37.45 (19) | C16—O2—C12—C13 | −176.20 (19) |
| N2—C4—C5—C9 | −145.99 (14) | N5—C12—C13—C14 | −0.5 (3) |
| C5—N3—C6—C7 | −1.0 (2) | O2—C12—C13—C14 | 179.96 (18) |
| N3—C6—C7—C8 | 1.5 (3) | C12—C13—C14—C15 | 0.2 (3) |
| C6—C7—C8—C9 | −0.4 (3) | N5—C11—C15—C14 | 0.1 (2) |
| N3—C5—C9—C8 | 1.7 (2) | N4—C11—C15—C14 | −179.76 (15) |
| C4—C5—C9—C8 | −174.61 (14) | C13—C14—C15—C11 | 0.0 (3) |
| C7—C8—C9—C5 | −1.2 (2) |
| H··· | ||||
| N4—H4 | 0.86 (1) | 2.24 (2) | 2.6939 (18) | 113 (1) |
| C15—H15···O1 | 0.93 | 2.33 | 2.909 (2) | 120 |
| C10—O1··· | 1.22 (1) | 3.42 (1) | 3.5486 (16) | 86 (1) |