| Literature DB >> 30225099 |
T N Sanjeeva Murthy1, Zeliha Atioğlu2, Mehmet Akkurt3, C S Chidan Kumar4, M K Veeraiah5, Ching Kheng Quah6, B P Siddaraju7.
Abstract
The mol-ecular structure of the title compound, C13H6Cl4OS, consists of a 2,5-di-chloro-thio-phene ring and a 2,4-di-chloro-phenyl ring linked via a prop-2-en-1-one spacer. The dihedral angle between the 2,5-di-chloro-thio-phene ring and the 2,4-di-chloro-phenyl ring is 12.24 (15)°. The mol-ecule has an E configuration about the C=C bond and the carbonyl group is syn with respect to the C=C bond. The mol-ecular conformation is stabilized by intra-molecular C-H⋯Cl contacts, producing S(6) and S(5) ring motifs. In the crystal, the mol-ecules are linked along the a-axis direction through face-to-face π-stacking between the thio-phene rings and the benzene rings of the mol-ecules in zigzag sheets lying parallel to the bc plane along the c axis. The inter-molecular inter-actions in the crystal packing were further analysed using Hirshfield surface analysis, which indicates that the most significant contacts are Cl⋯H/ H⋯Cl (20.8%), followed by Cl⋯Cl (18.7%), C⋯C (11.9%), Cl⋯S/S⋯Cl (10.9%), H⋯H (10.1%), C⋯H/H⋯C (9.3%) and O⋯H/H⋯O (7.6%).Entities:
Keywords: 2,4-dichlorophenyl ring; 2,5-dichlorothiophene ring; E configuration; Hirshfeld surface analysis; crystal structure
Year: 2018 PMID: 30225099 PMCID: PMC6127697 DOI: 10.1107/S2056989018010976
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing the atom labelling and displacement ellipsoids drawn at the 50% probability level. The two intramolecular C—H⋯Cl contacts (see Table1) are shown as dashed lines.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C6—H6 | 0.93 | 2.48 | 3.220 (3) | 136 |
| C7—H7 | 0.93 | 2.65 | 3.075 (3) | 108 |
Figure 2A view of the offset face-to-face π-stacking in the title compound, with the thick dashed lines indicating centroid-to-centroid interactions. The Cl⋯H and Cl⋯S interactions are also shown as dashed lines.
Summary of short interatomic contacts (Å) in the title compound
| Contact | Distance | Symmetry operation |
|---|---|---|
| Cl2⋯S1 | 3.660 (1) |
|
| H10 | 3.03 | − |
| C8⋯C9 | 3.573 (4) | 1 + |
Figure 3The two-dimensional fingerprint plots of the title compound, showing (a) all interactions, and delineated into (b) Cl⋯H/ H⋯Cl, (c) Cl⋯Cl, (d) C⋯C, (e) Cl⋯S/S⋯Cl, (f) H⋯H, (g) C⋯H/H⋯C and (h) O⋯H/H⋯O interactions.
Experimental details
| Crystal data | |
| Chemical formula | C13H6Cl4OS |
|
| 352.04 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 294 |
|
| 3.9867 (3), 13.4564 (11), 25.573 (2) |
|
| 1371.91 (19) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 1.00 |
| Crystal size (mm) | 0.63 × 0.23 × 0.11 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.757, 0.894 |
| No. of measured, independent and observed [ | 11402, 4226, 3425 |
|
| 0.026 |
| (sin θ/λ)max (Å−1) | 0.720 |
| Refinement | |
|
| 0.038, 0.102, 1.03 |
| No. of reflections | 4226 |
| No. of parameters | 172 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.25, −0.20 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.04 (5) |
Computer programs: APEX2 and SAINT (Bruker, 2007 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).
| C13H6Cl4OS | |
| Mo | |
| Orthorhombic, | Cell parameters from 4362 reflections |
| θ = 2.2–28.5° | |
| µ = 1.00 mm−1 | |
| Block, yellow | |
| 0.63 × 0.23 × 0.11 mm | |
| Bruker APEXII CCD diffractometer | 3425 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2007) | θmax = 30.8°, θmin = 1.6° |
| 11402 measured reflections | |
| 4226 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.25 e Å−3 | |
| 4226 reflections | Δρmin = −0.20 e Å−3 |
| 172 parameters | Absolute structure: Flack |
| 0 restraints | Absolute structure parameter: 0.04 (5) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 1.1673 (8) | 0.77797 (19) | 0.84012 (9) | 0.0391 (6) | |
| C2 | 1.2553 (8) | 0.6794 (2) | 0.91880 (10) | 0.0419 (6) | |
| C3 | 1.1115 (8) | 0.6258 (2) | 0.88062 (10) | 0.0410 (6) | |
| H3A | 1.052432 | 0.559246 | 0.884223 | 0.049* | |
| C4 | 1.0587 (8) | 0.6820 (2) | 0.83366 (10) | 0.0382 (6) | |
| C5 | 0.9016 (9) | 0.6327 (2) | 0.78763 (10) | 0.0444 (7) | |
| C6 | 0.7779 (10) | 0.6938 (2) | 0.74420 (11) | 0.0493 (7) | |
| H6A | 0.809837 | 0.762158 | 0.746266 | 0.059* | |
| C7 | 0.6253 (9) | 0.6588 (2) | 0.70264 (10) | 0.0462 (7) | |
| H7A | 0.596005 | 0.590316 | 0.700760 | 0.055* | |
| C8 | 0.4975 (8) | 0.7177 (2) | 0.65917 (10) | 0.0386 (6) | |
| C9 | 0.3384 (8) | 0.67552 (19) | 0.61621 (10) | 0.0403 (6) | |
| C10 | 0.2191 (8) | 0.7316 (2) | 0.57472 (10) | 0.0431 (6) | |
| H10A | 0.112503 | 0.701315 | 0.546561 | 0.052* | |
| C11 | 0.2620 (8) | 0.8330 (2) | 0.57612 (10) | 0.0425 (7) | |
| C12 | 0.4192 (9) | 0.8788 (2) | 0.61805 (11) | 0.0465 (7) | |
| H12A | 0.447771 | 0.947373 | 0.618483 | 0.056* | |
| C13 | 0.5316 (9) | 0.8219 (2) | 0.65879 (11) | 0.0438 (7) | |
| H13A | 0.633719 | 0.852975 | 0.687101 | 0.053* | |
| O1 | 0.8718 (9) | 0.54311 (16) | 0.78790 (9) | 0.0721 (9) | |
| S1 | 1.3313 (2) | 0.80047 (5) | 0.90119 (3) | 0.04511 (19) | |
| Cl1 | 1.1738 (3) | 0.87633 (5) | 0.79734 (3) | 0.0556 (2) | |
| Cl2 | 1.3606 (3) | 0.63887 (6) | 0.98017 (3) | 0.0593 (2) | |
| Cl3 | 0.2772 (3) | 0.54840 (5) | 0.61241 (3) | 0.0639 (3) | |
| Cl4 | 0.1204 (3) | 0.90504 (6) | 0.52453 (3) | 0.0605 (2) |
| C1 | 0.0422 (17) | 0.0375 (11) | 0.0377 (11) | 0.0021 (13) | 0.0062 (12) | −0.0015 (9) |
| C2 | 0.0429 (18) | 0.0443 (13) | 0.0384 (12) | 0.0015 (13) | −0.0020 (11) | 0.0019 (10) |
| C3 | 0.0430 (18) | 0.0392 (12) | 0.0408 (12) | −0.0001 (13) | −0.0012 (12) | 0.0003 (10) |
| C4 | 0.0376 (16) | 0.0406 (12) | 0.0364 (11) | 0.0014 (12) | 0.0021 (11) | −0.0021 (10) |
| C5 | 0.051 (2) | 0.0462 (14) | 0.0362 (12) | −0.0046 (14) | 0.0005 (12) | −0.0046 (10) |
| C6 | 0.059 (2) | 0.0451 (13) | 0.0437 (13) | −0.0026 (15) | −0.0080 (14) | −0.0013 (11) |
| C7 | 0.058 (2) | 0.0429 (13) | 0.0382 (12) | −0.0006 (15) | 0.0010 (14) | −0.0022 (10) |
| C8 | 0.0385 (16) | 0.0415 (13) | 0.0358 (11) | 0.0001 (12) | 0.0045 (11) | −0.0038 (10) |
| C9 | 0.0416 (16) | 0.0380 (11) | 0.0412 (12) | −0.0018 (13) | 0.0027 (13) | −0.0046 (9) |
| C10 | 0.0433 (18) | 0.0481 (13) | 0.0378 (12) | 0.0008 (13) | 0.0001 (12) | −0.0066 (10) |
| C11 | 0.0387 (18) | 0.0488 (14) | 0.0401 (12) | 0.0061 (13) | 0.0018 (11) | 0.0002 (10) |
| C12 | 0.048 (2) | 0.0396 (13) | 0.0522 (15) | −0.0007 (13) | 0.0013 (14) | −0.0061 (11) |
| C13 | 0.0468 (19) | 0.0422 (13) | 0.0426 (13) | −0.0004 (13) | −0.0034 (13) | −0.0080 (11) |
| O1 | 0.123 (3) | 0.0414 (11) | 0.0517 (12) | −0.0110 (15) | −0.0209 (16) | −0.0012 (9) |
| S1 | 0.0504 (5) | 0.0422 (3) | 0.0427 (3) | −0.0035 (3) | −0.0008 (3) | −0.0055 (3) |
| Cl1 | 0.0766 (6) | 0.0403 (3) | 0.0498 (4) | −0.0043 (4) | −0.0001 (4) | 0.0048 (3) |
| Cl2 | 0.0740 (6) | 0.0589 (4) | 0.0450 (3) | −0.0016 (4) | −0.0159 (4) | 0.0056 (3) |
| Cl3 | 0.0883 (8) | 0.0410 (3) | 0.0625 (4) | −0.0127 (4) | −0.0148 (5) | −0.0023 (3) |
| Cl4 | 0.0684 (6) | 0.0556 (4) | 0.0576 (4) | 0.0076 (4) | −0.0106 (4) | 0.0080 (3) |
| C1—C4 | 1.372 (4) | C7—C8 | 1.458 (4) |
| C1—Cl1 | 1.717 (3) | C7—H7A | 0.9300 |
| C1—S1 | 1.720 (3) | C8—C9 | 1.390 (4) |
| C2—C3 | 1.343 (4) | C8—C13 | 1.408 (4) |
| C2—Cl2 | 1.714 (3) | C9—C10 | 1.386 (4) |
| C2—S1 | 1.717 (3) | C9—Cl3 | 1.731 (3) |
| C3—C4 | 1.435 (4) | C10—C11 | 1.375 (4) |
| C3—H3A | 0.9300 | C10—H10A | 0.9300 |
| C4—C5 | 1.489 (4) | C11—C12 | 1.387 (4) |
| C5—O1 | 1.212 (4) | C11—Cl4 | 1.732 (3) |
| C5—C6 | 1.467 (4) | C12—C13 | 1.368 (4) |
| C6—C7 | 1.312 (4) | C12—H12A | 0.9300 |
| C6—H6A | 0.9300 | C13—H13A | 0.9300 |
| C4—C1—Cl1 | 130.8 (2) | C8—C7—H7A | 117.1 |
| C4—C1—S1 | 113.3 (2) | C9—C8—C13 | 116.5 (3) |
| Cl1—C1—S1 | 115.92 (16) | C9—C8—C7 | 122.7 (3) |
| C3—C2—Cl2 | 126.8 (2) | C13—C8—C7 | 120.9 (3) |
| C3—C2—S1 | 113.3 (2) | C10—C9—C8 | 122.6 (3) |
| Cl2—C2—S1 | 119.95 (17) | C10—C9—Cl3 | 116.5 (2) |
| C2—C3—C4 | 112.8 (3) | C8—C9—Cl3 | 120.8 (2) |
| C2—C3—H3A | 123.6 | C11—C10—C9 | 118.5 (3) |
| C4—C3—H3A | 123.6 | C11—C10—H10A | 120.7 |
| C1—C4—C3 | 110.5 (2) | C9—C10—H10A | 120.7 |
| C1—C4—C5 | 130.3 (2) | C10—C11—C12 | 121.2 (3) |
| C3—C4—C5 | 119.2 (3) | C10—C11—Cl4 | 119.7 (2) |
| O1—C5—C6 | 121.9 (3) | C12—C11—Cl4 | 119.2 (2) |
| O1—C5—C4 | 118.7 (3) | C13—C12—C11 | 119.2 (3) |
| C6—C5—C4 | 119.3 (3) | C13—C12—H12A | 120.4 |
| C7—C6—C5 | 124.6 (3) | C11—C12—H12A | 120.4 |
| C7—C6—H6A | 117.7 | C12—C13—C8 | 122.0 (3) |
| C5—C6—H6A | 117.7 | C12—C13—H13A | 119.0 |
| C6—C7—C8 | 125.7 (3) | C8—C13—H13A | 119.0 |
| C6—C7—H7A | 117.1 | C2—S1—C1 | 90.24 (13) |
| Cl2—C2—C3—C4 | −179.6 (2) | C13—C8—C9—C10 | 0.3 (5) |
| S1—C2—C3—C4 | 0.7 (4) | C7—C8—C9—C10 | −179.5 (3) |
| Cl1—C1—C4—C3 | 178.6 (3) | C13—C8—C9—Cl3 | −179.3 (3) |
| S1—C1—C4—C3 | 0.2 (4) | C7—C8—C9—Cl3 | 0.9 (4) |
| Cl1—C1—C4—C5 | −2.0 (6) | C8—C9—C10—C11 | 0.4 (5) |
| S1—C1—C4—C5 | 179.6 (3) | Cl3—C9—C10—C11 | 179.9 (3) |
| C2—C3—C4—C1 | −0.6 (4) | C9—C10—C11—C12 | −0.3 (5) |
| C2—C3—C4—C5 | 179.9 (3) | C9—C10—C11—Cl4 | 179.2 (2) |
| C1—C4—C5—O1 | 168.9 (4) | C10—C11—C12—C13 | −0.3 (5) |
| C3—C4—C5—O1 | −11.8 (5) | Cl4—C11—C12—C13 | −179.9 (3) |
| C1—C4—C5—C6 | −13.1 (5) | C11—C12—C13—C8 | 1.0 (5) |
| C3—C4—C5—C6 | 166.3 (3) | C9—C8—C13—C12 | −1.0 (5) |
| O1—C5—C6—C7 | 0.4 (6) | C7—C8—C13—C12 | 178.8 (3) |
| C4—C5—C6—C7 | −177.6 (3) | C3—C2—S1—C1 | −0.5 (3) |
| C5—C6—C7—C8 | 179.5 (3) | Cl2—C2—S1—C1 | 179.8 (2) |
| C6—C7—C8—C9 | 179.9 (4) | C4—C1—S1—C2 | 0.1 (3) |
| C6—C7—C8—C13 | 0.1 (5) | Cl1—C1—S1—C2 | −178.5 (2) |
| H··· | ||||
| C6—H6 | 0.93 | 2.48 | 3.220 (3) | 136 |
| C7—H7 | 0.93 | 2.65 | 3.075 (3) | 108 |