Literature DB >> 30224671

Template-free 2D particle fusion in localization microscopy.

Hamidreza Heydarian1, Florian Schueder2,3, Maximilian T Strauss2,3, Ben van Werkhoven4, Mohamadreza Fazel5, Keith A Lidke5, Ralf Jungmann2,3, Sjoerd Stallinga1, Bernd Rieger6.   

Abstract

Methods that fuse multiple localization microscopy images of a single structure can improve signal-to-noise ratio and resolution, but they generally suffer from template bias or sensitivity to registration errors. We present a template-free particle-fusion approach based on an all-to-all registration that provides robustness against individual misregistrations and underlabeling. We achieved 3.3-nm Fourier ring correlation (FRC) image resolution by fusing 383 DNA origami nanostructures with 80% labeling density, and 5.0-nm resolution for structures with 30% labeling density.

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Year:  2018        PMID: 30224671     DOI: 10.1038/s41592-018-0136-6

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  12 in total

1.  25th Anniversary of STED Microscopy and the 20th Anniversary of SIM: feature introduction.

Authors:  Peter Kner; Suliana Manley; Yoav Shechtman; Sjoerd Stallinga
Journal:  Biomed Opt Express       Date:  2020-02-28       Impact factor: 3.732

2.  Deciphering a hexameric protein complex with Angstrom optical resolution.

Authors:  Hisham Mazal; Franz-Ferdinand Wieser; Vahid Sandoghdar
Journal:  Elife       Date:  2022-05-26       Impact factor: 8.713

3.  Single-molecule localization microscopy as nonlinear inverse problem.

Authors:  Ji Yu; Ahmed Elmokadem
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-23       Impact factor: 11.205

4.  3D particle averaging and detection of macromolecular symmetry in localization microscopy.

Authors:  Hamidreza Heydarian; Maarten Joosten; Adrian Przybylski; Florian Schueder; Ralf Jungmann; Ben van Werkhoven; Jan Keller-Findeisen; Jonas Ries; Sjoerd Stallinga; Mark Bates; Bernd Rieger
Journal:  Nat Commun       Date:  2021-05-14       Impact factor: 14.919

5.  Deformed alignment of super-resolution images for semi-flexible structures.

Authors:  Xiaoyu Shi; Galo Garcia; Yina Wang; Jeremy F Reiter; Bo Huang
Journal:  PLoS One       Date:  2019-03-13       Impact factor: 3.240

6.  Nanoscale Pattern Extraction from Relative Positions of Sparse 3D Localizations.

Authors:  Alistair P Curd; Joanna Leng; Ruth E Hughes; Alexa J Cleasby; Brendan Rogers; Chi H Trinh; Michelle A Baird; Yasuharu Takagi; Christian Tiede; Christian Sieben; Suliana Manley; Thomas Schlichthaerle; Ralf Jungmann; Jonas Ries; Hari Shroff; Michelle Peckham
Journal:  Nano Lett       Date:  2020-11-30       Impact factor: 11.189

7.  Three-dimensional superresolution fluorescence microscopy maps the variable molecular architecture of the nuclear pore complex.

Authors:  Vilma Jimenez Sabinina; M Julius Hossain; Jean-Karim Hériché; Philipp Hoess; Bianca Nijmeijer; Shyamal Mosalaganti; Moritz Kueblbeck; Andrea Callegari; Anna Szymborska; Martin Beck; Jonas Ries; Jan Ellenberg
Journal:  Mol Biol Cell       Date:  2021-06-30       Impact factor: 4.138

8.  Joint Registration of Multiple Point Clouds for Fast Particle Fusion in Localization Microscopy.

Authors:  Wenxiu Wang; Hamidreza Heydarian; Teun A P M Huijben; Sjoerd Stallinga; Bernd Rieger
Journal:  Bioinformatics       Date:  2022-05-13       Impact factor: 6.931

9.  A workflow for sizing oligomeric biomolecules based on cryo single molecule localization microscopy.

Authors:  Magdalena C Schneider; Roger Telschow; Gwenael Mercier; Montserrat López-Martinez; Otmar Scherzer; Gerhard J Schütz
Journal:  PLoS One       Date:  2021-01-20       Impact factor: 3.240

10.  Detecting structural heterogeneity in single-molecule localization microscopy data.

Authors:  Teun A P M Huijben; Hamidreza Heydarian; Alexander Auer; Florian Schueder; Ralf Jungmann; Sjoerd Stallinga; Bernd Rieger
Journal:  Nat Commun       Date:  2021-06-18       Impact factor: 14.919

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