Literature DB >> 30222581

Bounded Fuzzy Possibilistic Method Reveals Information about Lung Cancer through Analysis of Metabolomics.

Hossein Yazdani, Leo L Cheng, David C Christiani, Azam Yazdani.   

Abstract

Learning methods, such as conventional clustering and classification, have been applied in diagnosing diseases to categorize samples based on their features. Going beyond clustering samples, membership degrees represent to what degree each sample belongs to a cluster. Variation of membership degrees in each cluster provides information about the cluster as a whole and each sample individually which enables us to have insights toward precision medicine. Membership degrees are measured more accurately through removing restrictions from clustering samples. Bounded Fuzzy Possibilistic Method (BFPM) introduces a membership function that keeps the search space flexible to cluster samples with higher accuracy. The method evaluates samples for their movement from one cluster to another. This technique allows us to find critical samples in advance those with the potential ability to belong to other clusters in the near future. BFPM was applied on metabolomics of individuals in a lung cancer case-control study. Metabolomics as proximal molecular signals to the actual disease processes may serve as strong biomarkers of current disease process. The goal is to know whether serum metabolites of a healthy human can be differentiated from those with lung cancer. Using BFPM, some differences were observed, the pathology data were evaluated, and critical samples were recognized.

Entities:  

Year:  2018        PMID: 30222581     DOI: 10.1109/TCBB.2018.2869757

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  2 in total

1.  Genetic variations analysis for complex brain disease diagnosis using machine learning techniques: opportunities and hurdles.

Authors:  Hala Ahmed; Louai Alarabi; Shaker El-Sappagh; Hassan Soliman; Mohammed Elmogy
Journal:  PeerJ Comput Sci       Date:  2021-09-20

2.  Learning a confidence score and the latent space of a new supervised autoencoder for diagnosis and prognosis in clinical metabolomic studies.

Authors:  David Chardin; Cyprien Gille; Thierry Pourcher; Olivier Humbert; Michel Barlaud
Journal:  BMC Bioinformatics       Date:  2022-09-01       Impact factor: 3.307

  2 in total

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