Literature DB >> 30222350

Metadynamics with Discriminants: A Tool for Understanding Chemistry.

GiovanniMaria Piccini1,2, Dan Mendels1,2, Michele Parrinello1,2.   

Abstract

We introduce an extension of a recently published method [ Mendels et al. J. Phys. Chem. Lett. 2018 , 9 , 2776 - 2781 ] to obtain low-dimensional collective variables for studying multiple states free energy processes in chemical reactions. The only information needed is a collection of simple statistics of the equilibrium properties of the reactants and product states. No information on the reaction mechanism has to be given. The method allows studying a large variety of chemical reactivity problems including multiple reaction pathways, isomerization, and stereo- and regiospecificity. We applied the method to two fundamental organic chemical reactions. First we study the SN2 nucleophilic substitution reaction of a Cl in CH2Cl2 leading to an understanding of the kinetic origin of the chirality inversion in such processes. Subsequently, we tackle the problem of regioselectivity in the hydrobromination of propene revealing that the nature of empirical observations such as Markovnikov's rule lies in the chemical kinetics rather than the thermodynamic stability of the products.

Entities:  

Year:  2018        PMID: 30222350     DOI: 10.1021/acs.jctc.8b00634

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  4 in total

1.  Deep learning the slow modes for rare events sampling.

Authors:  Luigi Bonati; GiovanniMaria Piccini; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-02       Impact factor: 11.205

2.  Graphene Oxyhydride Catalysts in View of Spin Radical Chemistry.

Authors:  Elena F Sheka
Journal:  Materials (Basel)       Date:  2020-01-24       Impact factor: 3.623

3.  Closer Look at Inverse Electron Demand Diels-Alder and Nucleophilic Addition Reactions on s-Tetrazines Using Enhanced Sampling Methods.

Authors:  Rangsiman Ketkaew; Fabrizio Creazzo; Sandra Luber
Journal:  Top Catal       Date:  2021-10-23       Impact factor: 2.910

4.  Solubility of Organic Salts in Solvent-Antisolvent Mixtures: A Combined Experimental and Molecular Dynamics Simulations Approach.

Authors:  Zoran Bjelobrk; Ashwin Kumar Rajagopalan; Dan Mendels; Tarak Karmakar; Michele Parrinello; Marco Mazzotti
Journal:  J Chem Theory Comput       Date:  2022-07-14       Impact factor: 6.578

  4 in total

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