Literature DB >> 30222096

Pelagivirga sediminicola gen. nov., sp. nov. isolated from the Bohai Sea.

Xiaofei Ji1, Cong Zhang2, Xiying Zhang3, Zheng Xu1, Yunfei Ding1, Yimei Zhang1, Qing Song1, Boqing Li1, Huilin Zhao1.   

Abstract

A Gram-stain-negative bacterium, strain BH-SD19T, that was isolated from a marine sediment sample collected from the Bohai Sea, was subjected to a polyphasic taxonomic study. Cells of BH-SD19T are non-flagellated, non-gliding, oval-shaped rods, 0.5-1.0 µm wide and 1.0-2.0 µm long. BH-SD19T is strictly aerobic, and oxidase- and catalase-positive. Growth occurs at 15-40 °C (optimum 35 °C), at pH 6.0-8.5 (optimum 7.0-7.5) and with 1-10 % (w/v) NaCl (optimum 2 %). The predominant fatty acids are C19 : 0cyclo ω8c (46.5 %), C16 : 0 (20.3 %) and C18 : 1ω7c and/or C18 : 1ω6c (10.6 %). The major respiratory quinone is Q-10. The major polar lipids are phosphatidylglycerol, phosphatidylethanolamine and an unidentified phospholipid. The DNA G+C content is 64.0 mol%. BH-SD19T shows the highest 16S rRNA sequence similarity to Pontibaca methylaminivorans (95.2 %) and strains of species of the genus Roseovarius(93.4-95.2 %). Sequence similarity values between BH-SD19T and other phylogenetically related species are all below 95.0 %. Phylogenetic trees based on 16S rRNA gene sequences indicate that BH-SD19T forms a distinct lineage and does not join any known genera in the trees. Phenotypic, chemotaxonomic and phylogenetic data indicate that BH-SD19T represents a novel genus and species in the family Rhodobacteraceae, for which the name Pelagivirga sediminicola gen. nov., sp. nov. is proposed. The type strain is BH-SD19T (=CCTCC AB 2017074T=KCTC 62202T).

Entities:  

Keywords:  Pelagivirga sediminicola gen. nov., sp. nov; marine sediment; novel genus; polyphasic taxonomic

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Year:  2018        PMID: 30222096     DOI: 10.1099/ijsem.0.003015

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  2 in total

1.  Oceanospirillum sediminis sp. nov., Isolated From Coastal Sediment in the Yellow Sea.

Authors:  Huilin Zhao; Yue Tian; Xunke Sun; Qianwen Wu; Si Chen; Jiangfan Shan; Yu Zhong; Xinyu Chen; Xiaoxue Gao; Shengnan Liu; Ruochen Wang; Zongjun Du; Boqing Li; Xiaofei Ji
Journal:  Curr Microbiol       Date:  2022-03-08       Impact factor: 2.188

2.  Roseobacters in a Sea of Poly- and Paraphyly: Whole Genome-Based Taxonomy of the Family Rhodobacteraceae and the Proposal for the Split of the "Roseobacter Clade" Into a Novel Family, Roseobacteraceae fam. nov.

Authors:  Kevin Y H Liang; Fabini D Orata; Yann F Boucher; Rebecca J Case
Journal:  Front Microbiol       Date:  2021-06-25       Impact factor: 5.640

  2 in total

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