Literature DB >> 30220942

A parallel fluid-solid coupling model using LAMMPS and Palabos based on the immersed boundary method.

Jifu Tan1, Talid Sinno2, Scott L Diamond2.   

Abstract

The study of viscous fluid flow coupled with rigid or deformable solids has many applications in biological and engineering problems, e.g., blood cell transport, drug delivery, and particulate flow. We developed a partitioned approach to solve this coupled Multiphysics problem. The fluid motion was solved by Palabos (Parallel Lattice Boltzmann Solver), while the solid displacement and deformation was simulated by LAMMPS (Large-scale Atomic/Molecular Massively Parallel Simulator). The coupling was achieved through the immersed boundary method (IBM). The code modeled both rigid and deformable solids exposed to flow. The code was validated with the Jeffery orbits of an ellipsoid particle in shear flow, red blood cell stretching test, and effective blood viscosity flowing in tubes. It demonstrated essentially linear scaling from 512 to 8192 cores for both strong and weak scaling cases. The computing time for the coupling increased with the solid fraction. An example of the fluid-solid coupling was given for flexible filaments (drug carriers) transport in a flowing blood cell suspensions, highlighting the advantages and capabilities of the developed code.

Entities:  

Keywords:  Immersed Boundary Method; LAMMPS; Lattice Boltzmann Method; Palabos; Parallel Computing

Year:  2018        PMID: 30220942      PMCID: PMC6136258          DOI: 10.1016/j.jocs.2018.02.006

Source DB:  PubMed          Journal:  J Comput Sci


  37 in total

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  4 in total

1.  Simulation of circulating tumor cell transport and adhesion in cell suspensions in microfluidic devices.

Authors:  Jifu Tan; Zhenya Ding; Michael Hood; Wei Li
Journal:  Biomicrofluidics       Date:  2019-11-07       Impact factor: 2.800

2.  Shear-induced non-monotonic viscosity dependence for model red blood cell suspensions in microvessels.

Authors:  Chih-Tang Liao; Yeng-Long Chen
Journal:  Biomicrofluidics       Date:  2019-11-18       Impact factor: 2.800

3.  Identifying the start of a platelet aggregate by the shear rate and the cell-depleted layer.

Authors:  B J M van Rooij; G Závodszky; V W Azizi Tarksalooyeh; A G Hoekstra
Journal:  J R Soc Interface       Date:  2019-10-02       Impact factor: 4.118

4.  PyOIF: Computational tool for modelling of multi-cell flows in complex geometries.

Authors:  Iveta Jančigová; Kristína Kovalčíková; Rudolf Weeber; Ivan Cimrák
Journal:  PLoS Comput Biol       Date:  2020-10-19       Impact factor: 4.475

  4 in total

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