| Literature DB >> 30218684 |
Pankaj Singh1, Gagandeep Singh1, Jenna Karsky1, Eric Nelson2, Sheela Ramamoorthy3.
Abstract
Neonatal enteritis caused by the porcine epidemic diarrhea virus (PEDV) is an important cause of high mortality and economic losses to the swine industry. Virus neutralization (V/N) assays are commonly requested in diagnostic laboratories for the assessment of protective antibodies. However, the visual assessment of viral cytopathic effects by operators to determine antibody titers or for viral quantification is a tedious, subjective and time-consuming process, especially when high volume testing is involved. To improve the ease of testing, a colorimetric virus neutralization and TCID50 assays were developed and validated in this study using (3-(4,5-dimethylthiazol-2-yl) Tr-2,5-diphenyltetrazolium- bromide) (MTT), a colorimetric agent which measures cell viability. The respective conventional assays were used as the gold standards. An OD cut off value of ≤0.53, selected by receiver operating characteristics analysis, could distinguish between wells with and without CPE accurately. Performance and reproducibility parameters of the colorimetric assays were comparable to the conventional assays. The described methods can reduce testing time in diagnostic laboratories, while significantly improving current protocols.Entities:
Keywords: Colorimetric; PEDV; Plaque assay; Porcine epidemic diarrhea virus; TCID(50); Virus neutralization
Mesh:
Substances:
Year: 2018 PMID: 30218684 PMCID: PMC7113882 DOI: 10.1016/j.jviromet.2018.09.003
Source DB: PubMed Journal: J Virol Methods ISSN: 0166-0934 Impact factor: 2.014
Fig. 1Plaque assay of the PEDV virus culture: Representative image of the PEDV plaque assay showing a complete loss of the cell sheet in the lower dilutions and distinct viral plaques in the 10−4 and 10-5 dilutions. The cell control shows an intact cell sheet.
Fig. 3Receiver Operating Characteristics (ROC) analysis: Dichotomized values for the visual readouts from 96 well plates of the TCID50 assays were compared with the OD values obtained from the MTT assay using ROC analysis tool in the MedCalc Inc. software, to obtain a cut-off value to distinguish between positive and negative wells. The true positive rate (sensitivity) and the false positive rate (100-specificity) were plotted at the Y and X axis respectively at different cutoff points for the OD values. The curve obtained is indicative of the sensitivity and specificity of the assay at a given cutoff point. The top left corner, representing the area under the curve (AUC) or accuracy of the test, was 0.931. At the selected cutoff of ≥ 0.53 the specificity was 95%, while the sensitivity was 81% with a p value of <0.0001.
Inter and intra-assay variation of the colorimetric PEDV virus neutralization assay*.
| Replicate 1 | Replicate 2 | |||||
|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | |
| Visual | 1:2 | >1:2 | >1:2 | >1:2 | >1:2 | >1:2 |
| Colorimetric | 1:2 | >1:2 | >1:2 | >1:2 | >1:2 | >1:2 |
| Visual | <1:1024 | <1:1024 | <1:1024 | 1:256 | 1:512 | <1:1024 |
| Colorimetric | <1:1024 | <1:1024 | <1:1024 | 1:256 | 1:512 | <1:1024 |
A cut-off value of ≤ 0.53 OD was used to distinguish between positive and negative wells for the colorimetric assay.
Two independent assays with triplicate values each.
Assessment of field samples by the conventional and colorimetric V/ N assays*.
| Sample | Replicate 1 | Replicate 2 | ||
|---|---|---|---|---|
| Colorimetric | Conventional | Colorimetric | Conventional | |
| 1 | 1:32 | 1:16 | 1:32 | 1:16 |
| 2 | 1:16 | 1:16 | 1:16 | 1:16 |
| 3 | 1:8 | 1:8 | 1:16 | 1:16 |
| 4 | 1:64 | 1:64 | 1:128 | 1:128 |
| 5 | 1:64 | 1:64 | 1:64 | 1:64 |
| 6 | 1:32 | 1:32 | 1:64 | 1:64 |
| 7 | 1:16 | 1:16 | 1:8 | 1:8 |
| 8 | 1:8 | 1:8 | 1:8 | 1:8 |
| 9 | 1:32 | 1:32 | 1:32 | 1:32 |
| 10 | 1:64 | 1:64 | 1:64 | 1:64 |
| 11 | 1:8 | 1:8 | 1:16 | 1:8 |
| 12 | 1:16 | 1:8 | 1:8 | 1:8 |
| 13 | 1:32 | 1:32 | 1:32 | 1:32 |
| 14 | 1:16 | 1:16 | 1:16 | 1:16 |
| 15 | 1:32 | 1:32 | 1:16 | 1:16 |
| 16 | 1:128 | 1:128 | 1:64 | 1:128 |
| 17 | 1:128 | 1:128 | 1:64 | 1:128 |
| 18 | 1:64 | 1:64 | 1:64 | 1:64 |
| 19 | 1:128 | 1:128 | 1:128 | 1:128 |
| 20 | 1:32 | 1:32 | 1:32 | 1:32 |
| 21 | 1:32 | 1:32 | 1:32 | 1:32 |
| 22 | 1:64 | 1:32 | 1:32 | 1:32 |
| 23 | 1:256 | 1:128 | 1:128 | 1:128 |
| 24 | 1:128 | 1:128 | 1:128 | 1:128 |
| 25 | 1:64 | 1:64 | 1:64 | 1:64 |
| 26 | 1:128 | 1:128 | 1:128 | 1:128 |
| 27 | 1:256 | 1:256 | 1:256 | 1:256 |
| 28 | 1:64 | 1:64 | 1:128 | 1:128 |
| 29 | 1:128 | 1:128 | 1:128 | 1:128 |
| 30 | 1:64 | 1:64 | 1:128 | 1:128 |
| 31 | 1:256 | 1:256 | 1:256 | 1:256 |
| 32 | 1:256 | 1:256 | 1:256 | 1:256 |
| 33 | 1:256 | 1:256 | 1:256 | 1:256 |
| 34 | 1:512 | 1:512 | 1:1024 | 1:1024 |
| 35 | 1:32 | 1:16 | 1:32 | 1:32 |
A cut-off value of ≤0.53 was used to distinguish between positive and negative wells.
Fig. 2Linear relationship between the logarithmic viral dilutions and OD values: The average OD values for each logarithmic dilution obtained from the readout of the MTT assay plotted against the logarithmic dilution factor. The relationship was linear between the 10−1 and 10-5 log dilutions. The dashed horizontal line indicates the average OD value of the cell controls.