| Literature DB >> 30218198 |
Abstract
Dimers of furan, 2,3-dihydrofuran, 2,5-dihydrofuran and tetrahydrofuran were investigated with the use of theoretical methods to determine the interactions that keep the molecules together. The QTAIM and NCI methods confirmed that for furan dimers the C-H⋯O hydrogen bond and stacking interactions can form the dimers with similar energy. For 2,3-dihydrofuran, 2,5-dihydrofuran and tetrahydrofuran, the decisive mechanism of dimer formation is the stacking interaction between the furan rings.Entities:
Keywords: 2,3-Dihydrofuran; 2,5-Dihydrofuran; Furan; Hydrogen bond; NCI; QTAIM; Stacking; Tetrahydrofuran
Mesh:
Substances:
Year: 2018 PMID: 30218198 PMCID: PMC6267657 DOI: 10.1007/s10822-018-0163-5
Source DB: PubMed Journal: J Comput Aided Mol Des ISSN: 0920-654X Impact factor: 3.686
Scheme 1Monomers of the investigated furan derivatives
Comparison of the relative, BSSE- and zero point energy corrected energies and angle between the furan ring planes
| B3LYP-GD3/6-311++G** | B3LYP-GD3/aug-cc-pVTZ | M062X/6-311++G** | ||||||
|---|---|---|---|---|---|---|---|---|
| Relative energy [kcal/mol] | Angle between ring planes [°] | Distance between ring center [Å] | Relative energy [kcal/mol] | Angle between ring planes [°] | Distance between ring center [Å] | Relative energy [kcal/mol] | Angle between ring planes [°] | Distance between ring center [Å] |
| Furan | ||||||||
| 0.00 | 1.94 | 4.4922 | 0.09 | 8.53 | 4.4922 | 0.51 | 8.53 | 4.4922 |
| 0.10 | 86.12 | 4.4339 | 0.00 | 72.61 | 4.6070 | 0.49 | 78.41 | 4.5136 |
| 0.48 | 60.33 | 4.4661 | 0.33 | 61.15 | 4.4571 | 0.09 | 61.04 | 4.4408 |
| 0.61 | 6.45 | 3.8164 | 0.42 | 4.11 | 3.7812 | 0.06 | 2.56 | 3.5509 |
| 0.71 | 17.03 | 3.7523 | 0.51 | 10.04 | 3.4435 | 0.00 | 10.04 | 3.4435 |
| 2,3-Dihydrofuran | ||||||||
| 0.00 | 0.04 | 3.7953 | 0.00 | 0.05 | 3.7790 | 0.00 | 0.04 | 3.7909 |
| 0.03 | 19.66 | 3.3710 | 0.11 | 17.55 | 3.7823 | 0.31 | 23.24 | 3.7193 |
| 0.80 | 88.57 | 3.3496 | 0.88 | 88.80 | 4.3307 | 0.32 | 88.80 | 4.3307 |
| 1.19 | 31.81 | 4.1143 | 1.36 | 31.81 | 4.1143 | 1.62 | 18.95 | 5.2104 |
| 1.30 | 61.44 | 4.3601 | 1.24 | 60.12 | 4.3641 | 1.45 | 52.99 | 4.2203 |
| 1.64 | 87.78 | 4.4961 | 1.55 | 89.92 | 4.4890 | 1.63 | 89.92 | 4.3854 |
| 2,5-Dihydrofuran | ||||||||
| 0.00 | 18.95 | 3.6617 | 0.00 | 30.69 | 4.0265 | 0.00 | 9.85 | 3.4443 |
| 0.77 | 89.95 | 4.4380 | 0.68 | 89.95 | 4.5361 | 0.70 | 89.97 | 4.4585 |
| 0.77 | 90.00 | 4.4244 | 0.68 | 90.00 | 4.4163 | 2.07 | 89.99 | 4.3390 |
| 0.82 | 69.72 | 4.4521 | 0.75 | 68.58 | 4.4320 | 0.78 | 69.67 | 4.4520 |
| 1.11 | 17.38 | 4.4755 | 1.06 | 33.53 | 4.4688 | 1.59 | 33.53 | 4.4755 |
| 1.22 | 27.37 | 4.4265 | 0.00 | 27.37 | 4.4224 | − 140.77 | 27.37 | 4.3001 |
| Tetrahydrofuran | ||||||||
| 0.00 | 39.02 | 4.0700 | 0.00 | 37.38 | 4.0714 | 0.33 | 49.76 | 3.9108 |
| 0.06 | 9.06 | 3.8519 | 0.00 | 9.19 | 3.8623 | 0.00 | 14.97 | 3.6543 |
| 0.10 | 28.51 | 4.0333 | 0.00 | 11.65 | 4.0021 | 1.54 | 22.40 | 4.4827 |
| 0.14 | 11.81 | 4.0140 | 0.05 | 12.62 | 4.0075 | 0.38 | 16.54 | 3.9029 |
| 0.33 | 87.99 | 4.5105 | 1.58 | 85.37 | 4.6766 | 2.21 | 89.83 | 4.3684 |
| 1.29 | 80.37 | 4.6566 | 1.16 | 80.37 | 4.6566 | 1.73 | 80.37 | 4.6566 |
| 1.64 | 35.59 | 4.3152 | 1.05 | 35.59 | 4.8057 | 0.84 | 35.24 | 4.3152 |
| 1.89 | 32.60 | 3.8292 | 0.08 | 17.66 | 3.8135 | − 150.07 | 9.99 | 3.7350 |
All the optimized equilibrium isomers without imaginary frequencies correspond to the minima on the potential energy surface
Fig. 1Geometries and relative energies of furan dimers optimized with B3LYP-GD3/6-311++G** method with including BSSE and zero point energy correction. Relative energies in kcal/mol
Fig. 2Geometries and relative energies of 2,3-dihydrofuran dimers optimized with B3LYP-GD3/6-311++G** method with including BSSE and zero point energy correction. Relative energies in kcal/mol
Fig. 3Geometries and relative energies of 2,5-dihydrofuran dimers optimized with B3LYP-GD3/6-311++G** method with including BSSE and zero point energy correction. Relative energies in kcal/mol
Fig. 4Geometries and relative energies of tetrahydrofuran dimers optimized with B3LYP-GD3/6-311++G** method with including zero point energy correction. Relative energies in kcal/mol
Characteristics of the bond critical points (BCP) for the interactions in the dimers of furan, 2,3-dihydrofuran, 2,5-dihydrofuran and tetrahydrofuran
| Relative energya | Atoms | ρ(r) [a.u.] | ε(r) | db [Å] | V(r) [a.u.] | G(r) [a.u.] | H⋯O [Å] | CHO [°] |
|---|---|---|---|---|---|---|---|---|
| Furan | ||||||||
| 0.00 | H⋯O | 0.0088 | 0.0783 | 0.0181 | − 0.0053 | 0.0064 | 2.4484 | 140.560 |
| H⋯O | 0.0088 | 0.0783 | 0.0181 | − 0.0053 | 0.0064 | 2.4484 | 140.560 | |
| 0.10 | H⋯O | 0.0062 | 0.2138 | 0.1234 | − 0.0038 | 0.0047 | 2.7189 | 115.617 |
| H⋯C | 0.0053 | 1.5300 | 0.2159 | − 0.0028 | 0.0036 | |||
| H⋯C | 0.0053 | 1.5255 | 0.2159 | − 0.0028 | 0.0036 | |||
| 0.48 | H⋯C | 0.0065 | 1.9676 | 0.7604 | − 0.0033 | 0.0042 | ||
| 0.61 | C⋯C | 0.0060 | 3.7052 | 0.1840 | − 0.0028 | 0.0035 | ||
| 0.71 | C⋯C | 0.0064 | 0.0594 | 0.0351 | − 0.0031 | 0.0040 | ||
| 2,3-Dihydrofuran | ||||||||
| 0.00 | H⋯O | 0.0087 | 0.0971 | 0.0244 | − 0.0053 | 0.0060 | 2.5505 | 135.342 |
| H⋯O | 0.0087 | 0.0972 | 0.0245 | − 0.0053 | 0.0060 | 2.5505 | 135.342 | |
| H⋯C | 0.0061 | 0.6296 | 0.7513 | − 0.0028 | 0.0034 | |||
| H⋯C | 0.0061 | 0.6304 | 0.7373 | − 0.0028 | 0.0034 | |||
| 0.03 | H⋯O | 0.0094 | 0.0816 | 0.0207 | − 0.0057 | 0.0065 | 2.5013 | 136.933 |
| H⋯O | 0.0094 | 0.0815 | 0.0207 | − 0.0057 | 0.0065 | 2.5013 | 136.933 | |
| H⋯C | 0.0059 | 0.5103 | 0.6178 | − 0.0026 | 0.0031 | |||
| H⋯C | 0.0059 | 0.5103 | 0.6176 | − 0.0026 | 0.0031 | |||
| 0.80 | H⋯O | 0.0110 | 0.0388 | 0.0132 | − 0.0066 | 0.0076 | 2.3986 | 142.422 |
| H⋯O | 0.0074 | 0.2942 | 0.0835 | − 0.0048 | 0.0057 | 2.6442 | 122.143 | |
| H⋯O | 0.0076 | 0.1350 | 0.0491 | − 0.0047 | 0.0054 | 2.6043 | 117.966 | |
| 1.19 | H⋯O | 0.0102 | 0.0931 | 0.0163 | − 0.0061 | 0.0075 | 1.6400 | 126.272 |
| H⋯O | 0.0102 | 0.0930 | 0.0163 | − 0.0061 | 0.0074 | 1.6400 | 126.272 | |
| 1.30 | H⋯O | 0.0084 | 0.1307 | 0.0493 | − 0.0052 | 0.0060 | 2.5681 | 127.797 |
| H⋯C | 0.0063 | 0.3744 | 0.2722 | − 0.0028 | 0.0035 | |||
| H⋯C | 0.0053 | 1.2489 | 0.4902 | − 0.0027 | 0.0036 | |||
| H⋯H | 0.0048 | 1.8790 | 0.5759 | − 0.0025 | 0.0033 | |||
| 1.64 | H⋯O | 0.0098 | 0.0644 | 0.0289 | − 0.0060 | 0.0068 | 2.4801 | 134.378 |
| H⋯C | 0.0051 | 0.3464 | 0.1997 | − 0.0023 | 0.0028 | |||
| H⋯H | 0.0048 | 0.7167 | 0.3480 | − 0.0025 | 0.0033 | |||
| H⋯H | 0.0040 | 0.2887 | 0.3366 | − 0.0022 | 0.0029 | |||
| 2,5-Dihydrofuran | ||||||||
| 0.00 | H⋯O | 0.0104 | 0.1097 | 0.0243 | − 0.0065 | 0.0073 | 2.4692 | 132.429 |
| H⋯O | 0.0107 | 0.1045 | 0.0215 | − 0.0066 | 0.0074 | 2.4573 | 133.596 | |
| H⋯C | 0.0050 | 0.3301 | 0.2873 | − 0.0022 | 0.0027 | |||
| H⋯C | 0.0050 | 0.3411 | 0.3339 | − 0.0022 | 0.0026 | |||
| 0.77 | H⋯O | 0.0117 | 0.0807 | 0.0233 | − 0.0072 | 0.0082 | 2.3978 | 135.718 |
| 0.77 | H⋯O | 0.0122 | 0.0733 | 0.0156 | − 0.0075 | 0.0085 | 2.3806 | 140.527 |
| H⋯C | 0.0044 | 1.2436 | 0.3810 | − 0.0020 | 0.0026 | |||
| H⋯C | 0.0044 | 1.2479 | 0.3814 | − 0.0020 | 0.0026 | |||
| 0.82 | H⋯O | 0.0111 | 0.1336 | 0.0423 | − 0.0068 | 0.0078 | 2.4465 | 129.035 |
| H⋯C | 0.0053 | 0.5346 | 0.6855 | − 0.0023 | 0.0028 | |||
| H⋯H | 0.0035 | 0.7171 | 0.3975 | − 0.0019 | 0.0025 | |||
| 1.11 | H⋯O | 0.0099 | 0.0579 | 0.0218 | − 0.0061 | 0.0071 | 2.4494 | 135.402 |
| H⋯O | 0.0096 | 0.1058 | 0.0227 | − 0.0059 | 0.0065 | 2.5264 | 131.376 | |
| H⋯C | 0.0039 | 0.2447 | 0.5118 | − 0.0018 | 0.0022 | |||
| 1.22 | H⋯O | 0.0060 | 0.7999 | 0.3047 | − 0.0041 | 0.0049 | 2.9748 | 87.773 |
| H⋯O | 0.0074 | 0.4633 | 0.4203 | − 0.0049 | 0.0060 | 2.7557 | 99.558 | |
| Tetrahydrofuran | ||||||||
| 0.00 | H⋯O | 0.0069 | 0.1052 | 0.0387 | − 0.0045 | 0.0051 | 2.6988 | 125.131 |
| H⋯O | 0.0100 | 0.1299 | 0.0250 | − 0.0060 | 0.0069 | 2.4754 | 137.636 | |
| H⋯O | 0.0111 | 0.0444 | 0.0090 | − 0.0068 | 0.0076 | 2.4293 | 143.184 | |
| H⋯H | 0.0037 | 2.0328 | 0.2626 | − 0.0020 | 0.0026 | |||
| 0.06 | H⋯O | 0.0111 | 0.0629 | 0.0041 | − 0.0067 | 0.0074 | 2.4182 | 156.946 |
| H⋯O | 0.0105 | 0.0710 | 0.0171 | − 0.0063 | 0.0071 | 2.4562 | 148.966 | |
| H⋯H | 0.0045 | 0.1561 | 0.0715 | − 0.0023 | 0.0028 | |||
| H⋯H | 0.0049 | 0.2065 | 0.1366 | − 0.0026 | 0.0033 | |||
| H⋯H | 0.0037 | 2.1208 | 0.6785 | − 0.0021 | 0.0027 | |||
| 0.10 | H⋯O | 0.0112 | 0.0461 | 0.0135 | − 0.0070 | 0.0078 | 2.4301 | 137.183 |
| H⋯O | 0.0057 | 0.7396 | 0.2668 | − 0.0039 | 0.0047 | 2.8688 | 105.805 | |
| H⋯O | 0.0083 | 0.0917 | 0.0668 | − 0.0052 | 0.0059 | 2.5957 | 126.335 | |
| H⋯O | 0.0061 | 0.0696 | 0.0741 | − 0.0040 | 0.0046 | 2.7173 | 122.740 | |
| H⋯H | 0.0040 | 0.3203 | 0.1197 | − 0.0021 | 0.0026 | |||
| 0.14 | H⋯O | 0.0109 | 0.0514 | 0.0085 | − 0.0067 | 0.0074 | 2.4420 | 142.027 |
| H⋯O | 0.0095 | 0.0808 | 0.0383 | − 0.0058 | 0.0066 | 2.5383 | 132.523 | |
| H⋯H | 0.0043 | 0.3021 | 0.3243 | − 0.0025 | 0.0032 | |||
| H⋯H | 0.0045 | 0.2951 | 0.0867 | − 0.0023 | 0.0028 | |||
| 0.33 | H⋯O | 0.0061 | 0.5540 | 0.2169 | − 0.0037 | 0.0045 | 2.7202 | 109.953 |
| H⋯O | 0.0068 | 0.3676 | 0.1949 | − 0.0043 | 0.0051 | |||
| H⋯H | 0.0036 | 0.4409 | 0.2533 | − 0.0019 | 0.0025 | |||
| H⋯H | 0.0037 | 0.3774 | 0.3142 | − 0.0019 | 0.0025 | |||
| H⋯H | 0.0043 | 0.1855 | 0.2943 | − 0.0024 | 0.0032 | |||
| H⋯H | 0.0045 | 0.0712 | 0.1125 | − 0.0024 | 0.0030 | |||
| 1.29 | H⋯O | 0.0109 | 0.0877 | 0.0146 | − 0.0066 | 0.0074 | 2.4407 | 143.984 |
| H⋯H | 0.0047 | 0.3370 | 0.1505 | − 0.0024 | 0.0030 | |||
| H⋯H | 0.0043 | 0.1019 | 0.0619 | − 0.0022 | 0.0027 | |||
| 1.64 | H⋯O | 0.0074 | 0.2230 | 0.0441 | − 0.0047 | 0.0053 | 2.6601 | 126.962 |
| H⋯O | 0.0080 | 0.1908 | 0.0341 | − 0.0048 | 0.0055 | |||
| H⋯H | 0.0039 | 0.4176 | 0.1311 | − 0.0021 | 0.0026 | |||
| H⋯H | 0.0040 | 0.0611 | 0.0821 | − 0.0021 | 0.0026 | |||
| H⋯H | 0.0046 | 0.4227 | 0.1918 | − 0.0025 | 0.0031 | |||
| H⋯H | 0.0050 | 0.2170 | 0.0600 | − 0.0025 | 0.0030 | |||
| 1.89 | H⋯O | 0.0104 | 0.0587 | 0.0211 | − 0.0064 | 0.0072 | 2.4407 | 143.984 |
| H⋯O | 0.0070 | 0.2376 | 0.1366 | − 0.0045 | 0.0053 | 2.6928 | 116.312 | |
| H⋯O | 0.0072 | 0.2460 | 0.1607 | − 0.0047 | 0.0056 | 2.6828 | 113.742 | |
| H⋯H | 0.0051 | 0.2608 | 0.1237 | − 0.0028 | 0.0034 | |||
| H⋯H | 0.0051 | 0.2210 | 0.0614 | − 0.0027 | 0.0032 | |||
aRelative energy refers to the structures in Figs. 1, 2, 3 and 4
bd—the difference between the length of the bond path and the distance of the atoms linked by the bond path
Fig. 5NCI plots of the reduced density gradient versus the electron density multiplied by the sign of λ2 for the investigated dimers. The spikes at about 0 refer to dispersive interactions, the spike at about 0.05 a.u. illustrates the repulsive interaction in the center of the monomers
Decompositions of the interaction energy of the investigated furan dimers expressed in kcal/mol
| Relative energya | Eelect | EPauli | Esteric | Eorb | Edysp | Etotal |
|---|---|---|---|---|---|---|
| Furan | ||||||
| 0.00 | − 3.00 | 3.09 | 0.09 | − 1.13 | − 2.07 | − 3.11 |
| 0.10 | − 2.12 | 3.15 | 1.03 | − 1.08 | − 3.13 | − 3.18 |
| 0.48 | − 1.80 | 2.91 | 1.11 | − 1.16 | − 2.78 | − 2.82 |
| 0.61 | − 2.31 | 4.43 | 2.12 | − 1.04 | − 3.66 | − 2.58 |
| 0.71 | − 2.25 | 4.43 | 2.18 | − 0.99 | − 3.71 | − 2.52 |
| 2,3-Dihydrofuran | ||||||
| 0.00 | − 4.40 | 6.13 | 1.73 | − 1.99 | − 5.25 | − 5.51 |
| 0.03 | − 4.70 | 6.27 | 1.57 | − 1.96 | − 5.17 | − 5.56 |
| 0.80 | − 4.10 | 4.81 | 0.71 | − 1.58 | − 3.55 | − 4.41 |
| 1.19 | − 45.06 | 111.9 | 66.84 | − 24.52 | − 3.35 | 38.97 |
| 1.30 | − 3.52 | 5.01 | 1.49 | − 1.44 | − 3.9 | − 3.86 |
| 1.64 | − 2.53 | 4.25 | 1.72 | − 1.29 | − 4.09 | − 3.66 |
| 2,5-Dihydrofuran | ||||||
| 0.00 | − 4.62 | 6.40 | 1.78 | − 1.87 | − 4.98 | − 5.07 |
| 0.77 | − 3.70 | 5.06 | 1.36 | − 1.55 | − 3.94 | − 4.13 |
| 0.77 | − 3.32 | 4.88 | 1.56 | − 1.52 | − 4.19 | − 4.16 |
| 0.82 | − 4.56 | 4.50 | − 0.06 | − 2.69 | − 4.04 | − 6.79 |
| 1.11 | − 3.49 | 4.90 | 1.41 | − 1.57 | − 3.77 | − 3.93 |
| 1.22 | − 2.63 | 4.41 | 1.78 | − 1.38 | − 4.20 | − 3.80 |
| Tetrahydrofuran | ||||||
| 0.00 | − 4.78 | 6.43 | 1.65 | − 2.04 | − 4.75 | − 5.14 |
| 0.06 | − 4.45 | 6.46 | 2.01 | − 2.17 | − 4.75 | − 5.37 |
| 0.10 | − 41.04 | 95.37 | 54.33 | − 23.33 | − 3.68 | 27.32 |
| 0.14 | − 4.28 | 6.14 | 1.86 | − 2.03 | − 4.99 | − 5.17 |
| 0.33 | − 2.12 | 4.24 | 2.12 | − 1.24 | − 4.36 | − 3.48 |
| 1.29 | − 2.74 | 4.31 | 1.57 | − 1.42 | − 3.84 | − 3.70 |
| 1.64 | − 2.52 | 4.91 | 2.39 | − 1.59 | − 4.56 | − 3.77 |
| 1.84 | − 4.05 | 6.01 | 1.96 | − 1.93 | − 5.12 | − 5.10 |
aRelative energy refers to the structures in Figs. 1, 2, 3 and 4