| Literature DB >> 30214102 |
Reza Safdari1, Marjan Ghazi Saeedi1, Hossein Masoumi-Asl2, Peyman Rezaei-Hachesu3, Kayvan Mirnia4, Niloofar Mohammadzadeh1, Taha Samad-Soltani3.
Abstract
BACKGROUND: Success of infection treatment depends on the availability of accurate, reliable, and comprehensive data, information, and knowledge at the point of therapeutic decision-making. The identification of a national minimum data set will support the development and implementation of an effective surveillance system. The goal of this study was to develop a national antimicrobial resistance surveillance minimum data set.Entities:
Keywords: Biosurveillance ; Dataset ; Global health ; Iran; Microbial ; Drug resistance
Year: 2018 PMID: 30214102 PMCID: PMC6123552
Source DB: PubMed Journal: Iran J Med Sci ISSN: 0253-0716
Demographic features of the experts in the Delphi technique
| Specialty | Age | Gender | Academic Level | Job | Experience |
|---|---|---|---|---|---|
| Pediatrics infectious disease fellowship | 52 | Male | PhD | MOHME CDC expert | >15 y |
| Infectious disease medicine | 40 | Male | PhD | University professor | >7 y |
| Bacteriology expert | 46 | Male | PhD | University professor | >10 y |
| Bacteriology expert | 65 | Male | PhD | University professor | >25 y |
| Health information management expert | Female | PhD | University professor | >30 y | |
| Health information management expert | 35 | Male | PhD | University professor | >7 y |
MOHME: Iranian ministry of health and medical education; CDC: Centers for disease control and prevention
Result of the Delphi technique on the extracted data elements
| Categories | Number of Data Elements | Delphi First Round | Delphi Second Round | Result | ||||
|---|---|---|---|---|---|---|---|---|
| <50% | 50-75% | >75% | <50% | 50-75% | >75% | |||
| Basic data | 29 | 6 | 7 | 16 | 3 | 0 | 4 | 20 |
| Clinical data | 11 | 1 | 3 | 7 | 1 | 0 | 2 | 9 |
| EARS-Net data | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 0 |
| Electronic reporting data | 19 | 12 | 5 | 2 | 2 | 0 | 3 | 5 |
| Nutrition data | 17 | 13 | 4 | 0 | 4 | 0 | 0 | 0 |
| Infection control data | 8 | 0 | 3 | 5 | 0 | 0 | 3 | 8 |
| Microbiology data | 19 | 3 | 7 | 9 | 4 | 0 | 3 | 12 |
| Drug data | 7 | 4 | 0 | 3 | 4 | 0 | 0 | 3 |
| Specimen data | 5 | 4 | 1 | 0 | 1 | 0 | 0 | 0 |
| WHO-derived data | 24 | 6 | 8 | 10 | 5 | 0 | 3 | 13 |
| Total | 144 | 54 | 38 | 52 | 24 | 0 | 18 | 80 |
EARS Net data: European antimicrobial resistance surveillance network; WHO: World health organization
AMRSS data categories and the elements for Iran and related MAKSA coding
| No | Categories | Data Elements | With an Equivalent Field in GLASS | MAKSA Coding |
|---|---|---|---|---|
| 1 | Basic data | Country | * | ISO_3166-1 |
| 2 | Laboratory | String | ||
| 3 | Identification number (general unique ID, e.g., national code) | * | String | |
| 4 | Date of birth | Do _Date | ||
| 5 | Age | * | Derived element - integer | |
| 6 | Gender | * | ||
| 7 | WHO age category | * | WHO standard international age classification | |
| 8 | Specimen number | String | ||
| 9 | Specimen date | * | Do _Date | |
| 10 | Specimen type | * | thritaEHR. Specimen type | |
| 11 | Specimen start and end date | Do _Date | ||
| 12 | Reason (unresponsive to treatment, etc.) | SCTID: 408773008(SNOMED-CT) | ||
| 13 | Isolate number | String | ||
| 14 | Organism | * | SCTID: 264395009(SNOMED-CT) | |
| 15 | Organism type (subgroups) | SCTID: 264395009 (SNOMED-CT) | ||
| 16 | Beta-lactamase | SCTID: 79744009 (SNOMED-CT) | ||
| 17 | ESBL | SCTID: 409799006(SNOMED-CT) | ||
| 18 | Carbapenem | String | ||
| 19 | MRSA screening test | CPT 901617 | ||
| 20 | Serotype (in detailed reports) | SCTID: 260820006(SNOMED-CT) | ||
| 21 | Clinical data | Date of admission | Do _Date | |
| 22 | Date of discharge | Do _Date | ||
| 23 | Date of operation | Do _Date | ||
| 24 | Date of ward admission | Do _Date | ||
| 25 | Diagnosis | ICD-10 | ||
| 26 | Operation | ICD-10-CM | ||
| 27 | Prior antibiotic therapy | SCTID: 281789004(SNOMED-CT) | ||
| 28 | Response to treatment | SCTID: 182985004(SNOMED-CT) | ||
| 29 | Origin (hospital- or community-acquired) | * | SCTID: 255396000(SNOMED-CT) | |
| 30 | Electronic reporting data (death data) | Date of death | Do _Date | |
| 31 | Time of death | Do _Time | ||
| 32 | Death speed (diagnosis to death, shows disease severity) | ICD-10 | ||
| 33 | Patient address (street, city, and province) or only geographical region | Country divisions | ||
| 34 | Specimen site | SCTID: 430304001(SNOMED-CT) | ||
| 35 | Infection control | Bacteremia | SCTID: 5758002(SNOMED-CT) | |
| 36 | Central catheter | SCTID: 52124006(SNOMED-CT) | ||
| 37 | Urine catheter | SCTID: 20568009(SNOMED-CT) | ||
| 38 | Ventilator | SCTID: 706172005(SNOMED-CT) | ||
| 39 | Nosocomial infection | SCTID: 19168005(SNOMED-CT) | ||
| 40 | Peripheral catheter | SCTID: 423954007(SNOMED-CT) | ||
| 41 | Surgical site infection | SCTID: 423954007(SNOMED-CT) | ||
| 42 | Urinary tract infection | SCTID: 68566005(SNOMED-CT) | ||
| 43 | Microbiology data | ESBL producer | SCTID: 409799006(SNOMED-CT) | |
| 44 | Gram stain | SCTID: 62777006(SNOMED-CT) | ||
| 45 | H antigen phase 1 | SCTID: 115744003(SNOMED-CT) | ||
| 46 | H antigen phase 2 | “ | ||
| 47 | Hodge test | SCTID: 336769001(SNOMED-CT) | ||
| 48 | Microscopy | SCTID: 117259009(SNOMED-CT) | ||
| 49 | O antigen | SCTID: 23434000 (SNOMED-CT) | ||
| 50 | Oxacillin screen plate | SCTID: 67466005 (SNOMED-CT) | ||
| 51 | Urine colony count | SCTID: 104193001 (SNOMED-CT) | ||
| 52 | Vancomycin screen plate | String | ||
| 53 | VRE | SCTID: 113727004 (SNOMED-CT) | ||
| 54 | BLNAR | SCTID: 712679007 (SNOMED-CT) | ||
| 55 | Pharmacy data | Antibiotic treatment | SCTID: 281789004 (SNOMED-CT) | |
| 56 | Start date | Do _Date | ||
| 57 | End date | Do _Date | ||
| 58 | WHO-derived data | District | * | Country Divisions |
| 59 | Epid No (Unique ID) | * | String | |
| 60 | Date sent to ref lab | * | Do _Date | |
| 61 | Date received in ref lab | * | Do _Date | |
| 62 | Date result to the district | * | Do _Date | |
| 63 | PMN% | SCTID: 43657008(SNOMED-CT) | ||
| 64 | Lymphocyte% | SCTID: 409599009 (SNOMED-CT) | ||
| 65 | Monocyte% | SCTID: 401100006(SNOMED-CT) | ||
| 66 | Eosinophil% | SCTID: 71960002(SNOMED-CT) | ||
| 67 | Leucocytes% | SCTID: 106200001(SNOMED-CT) | ||
| 68 | RBC | SCTID: 14089001(SNOMED-CT) | ||
| 69 | Parasites | SCTID: 252400008(SNOMED-CT) | ||
| 70 | User Information | * | string | |
| 71 | Expert recommended data | Underlying disease | ICD-10 | |
| 72 | Immunodeficiency | SCTID: 234532001(SNOMED-CT) | ||
| 73 | History of travel | SCTID: 443846001(SNOMED-CT) | ||
| 74 | Destination in travel | String | ||
| 75 | Length of stay in destination | Integer | ||
| 76 | Infection exposure history in 2 weeks or more | ICD-10 | ||
| 77 | Type of antimicrobial dosage (intravenous or oral) | SCTID: 18629005(SNOMED-CT) | ||
| 78 | Cancer complication | ICD-10 | ||
| 79 | Transfusion history | SCTID: 161664006(SNOMED-CT) | ||
| 80 | Vaccination history | SCTID: 425457005(SNOMED-CT) | ||
AMRSS: Antimicrobial resistance surveillance system; GLASS: Global antimicrobial resistance surveillance system; MAKSA: Iranian electronic health record coding system
WHO-required data elements in the national reporting of each participant country
| Pathogens | Recommended Minimum Data Set | Recommended on GLASS | Iran National AMRSS MDS | NARMS | EARS-Net | AMRU |
|---|---|---|---|---|---|---|
|
| Unique identifier | + | + | + (O157) | + | + |
| Age or date of birth | + | + | + (O157) | + | + | |
| Gender | + | + | + (O157) | + | + | |
| Health-care facility | - | + | + (O157) | + | + | |
| Care group | + | + | + (O157) | + | + | |
| Date of admission | + | + | + (O157) | + | - | |
| Type of specimen | + | + | + (O157) | + | + | |
| Test result (R/I/S) | + | + | + (O157) | + | + | |
|
| Unique identifier | + | + | - | + | + |
| Age or date of birth | + | + | - | + | + | |
| Gender | + | + | - | + | + | |
| Health-care facility | - | + | - | + | + | |
| Care group | + | + | - | + | + | |
| Date of admission | + | + | - | + | - | |
| Type of specimen | + | + | - | + | + | |
| Test result (R/I/S) | + | + | - | + | + | |
| Presenting symptoms | - | + | - | - | - | |
| Predisposing factors (e.g., cancer, travel, catheter, etc.) | - | + | - | - | - | |
|
| Not mentioned | - | + | - | + | + |
|
| Unique identifier | + | + | - | + | + |
| Age or date of birth | + | + | - | + | + | |
| Gender | + | + | - | + | + | |
| Health-care facility | - | + | + | |||
| Care group | + | + | - | + | + | |
| Date of admission | + | + | - | + | - | |
| Type of specimen | + | + | - | + | + | |
| Test result (R/I/S) | + | + | - | + | + | |
| Presenting symptoms | - | + | - | - | - | |
| Predisposing factors (e.g., surgery, trauma, etc.) | - | - | - | |||
| Method of identification | - | + | - | - | - | |
|
| Unique identifier | + | + | + | - | + |
| Age or date of birth | + | + | + | - | + | |
| Gender | + | + | + | - | + | |
| Health-care facility | - | + | + | - | + | |
| Care group | + | + | + | - | + | |
| Date of admission | + | + | + | - | - | |
| Type of specimen | + | + | + | - | + | |
| Test result (R/I/S) | + | + | + | - | + | |
| Outcome (death or recovery) | - | + | + | - | - | |
|
| As for Shigella | “ | “ | - | + | + |
| Vaccination history | - | + | - | - | - | |
|
| As for Shigella | “ | “ | + | - | + |
|
| Unique identifier | + | + | - | - | + |
| Age or date of birth | + | + | - | - | + | |
| Gender | + | + | - | - | + | |
| Risk behaviors | - | - | - | - | - | |
| Date of onset symptoms | - | + | - | - | - | |
| Date of specimen | + | + | - | - | + | |
| Anatomic site sampled | - | + | - | - | - | |
| Test result (R/I/S) | + | + | - | - | + | |
+Positive result; -Negative result or not surveyed; WHO: World Health Organization; AMRSS: Antimicrobial resistance surveillance system; MDS: Minimal data set; NARMS: National Antimicrobial Resistance Monitoring System; EARS Net data: European Antimicrobial Resistance Surveillance Network
Figure1Shows schematic view of the application of a minimum data set (MDS) in the Iranian National Health System.