Literature DB >> 30212260

Planktonic Marine Archaea.

Alyson E Santoro1, R Alexander Richter2, Christopher L Dupont2.   

Abstract

Archaea are ubiquitous and abundant members of the marine plankton. Once thought of as rare organisms found in exotic extremes of temperature, pressure, or salinity, archaea are now known in nearly every marine environment. Though frequently referred to collectively, the planktonic archaea actually comprise four major phylogenetic groups, each with its own distinct physiology and ecology. Only one group-the marine Thaumarchaeota-has cultivated representatives, making marine archaea an attractive focus point for the latest developments in cultivation-independent molecular methods. Here, we review the ecology, physiology, and biogeochemical impact of the four archaeal groups using recent insights from cultures and large-scale environmental sequencing studies. We highlight key gaps in our knowledge about the ecological roles of marine archaea in carbon flow and food web interactions. We emphasize the incredible uncultivated diversity within each of the four groups, suggesting there is much more to be done.

Entities:  

Keywords:  dark ocean; metagenomics; nitrification; thaumarchaea

Year:  2018        PMID: 30212260     DOI: 10.1146/annurev-marine-121916-063141

Source DB:  PubMed          Journal:  Ann Rev Mar Sci        ISSN: 1941-0611


  30 in total

1.  Annual Partitioning Patterns of Labyrinthulomycetes Protists Reveal Their Multifaceted Role in Marine Microbial Food Webs.

Authors:  Ningdong Xie; Dana E Hunt; Zackary I Johnson; Yaodong He; Guangyi Wang
Journal:  Appl Environ Microbiol       Date:  2021-01-04       Impact factor: 4.792

Review 2.  The host-associated archaeome.

Authors:  Guillaume Borrel; Jean-François Brugère; Simonetta Gribaldo; Ruth A Schmitz; Christine Moissl-Eichinger
Journal:  Nat Rev Microbiol       Date:  2020-07-20       Impact factor: 60.633

Review 3.  Contributions of single-cell genomics to our understanding of planktonic marine archaea.

Authors:  A E Santoro; M Kellom; S M Laperriere
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-10-07       Impact factor: 6.237

4.  Vitamin B12-dependent biosynthesis ties amplified 2-methylhopanoid production during oceanic anoxic events to nitrification.

Authors:  Felix J Elling; Jordon D Hemingway; Thomas W Evans; Jenan J Kharbush; Eva Spieck; Roger E Summons; Ann Pearson
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-14       Impact factor: 11.205

5.  Archaeal lipids trace ecology and evolution of marine ammonia-oxidizing archaea.

Authors:  Ronnakrit Rattanasriampaipong; Yi Ge Zhang; Ann Pearson; Brian P Hedlund; Shuang Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-29       Impact factor: 12.779

6.  Utilization of Shrimp waste as a novel media for marine bacteria isolation.

Authors:  A Mathivanan; S Ravikumar; G Selvakumar; K Devanandh
Journal:  3 Biotech       Date:  2021-01-02       Impact factor: 2.406

7.  Towards omics-based predictions of planktonic functional composition from environmental data.

Authors:  Sakina-Dorothée Ayata; Lucie Bittner; Emile Faure
Journal:  Nat Commun       Date:  2021-07-16       Impact factor: 14.919

8.  Cross-Sectional Variations in Structure and Function of Coral Reef Microbiome With Local Anthropogenic Impacts on the Kenyan Coast of the Indian Ocean.

Authors:  Sammy Wambua; Hadrien Gourlé; Etienne P de Villiers; Oskar Karlsson-Lindsjö; Nina Wambiji; Angus Macdonald; Erik Bongcam-Rudloff; Santie de Villiers
Journal:  Front Microbiol       Date:  2021-06-23       Impact factor: 5.640

9.  Different Active Microbial Communities in Two Contrasted Subantarctic Fjords.

Authors:  Claudia Maturana-Martínez; Camila Fernández; Humberto E González; Pierre E Galand
Journal:  Front Microbiol       Date:  2021-06-24       Impact factor: 5.640

10.  Characterization of the Exometabolome of Nitrosopumilus maritimus SCM1 by Liquid Chromatography-Ion Mobility Mass Spectrometry.

Authors:  Kai P Law; Wei He; Jianchang Tao; Chuanlun Zhang
Journal:  Front Microbiol       Date:  2021-07-01       Impact factor: 5.640

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