Literature DB >> 30197464

Heart Chamber Segmentation from CT Using Convolutional Neural Networks.

James D Dormer1, Ling Ma1, Martin Halicek2,3, Carolyn M Reilly4, Eduard Schreibmann5, Baowei Fei1,3,6.   

Abstract

CT is routinely used for radiotherapy planning with organs and regions of interest being segmented for diagnostic evaluation and parameter optimization. For cardiac segmentation, many methods have been proposed for left ventricular segmentation, but few for simultaneous segmentation of the entire heart. In this work, we present a convolutional neural networks (CNN)-based cardiac chamber segmentation method for 3D CT with 5 classes: left ventricle, right ventricle, left atrium, right atrium, and background. We achieved an overall accuracy of 87.2% ± 3.3% and an overall chamber accuracy of 85.6 ± 6.1%. The deep learning based segmentation method may provide an automatic tool for cardiac segmentation on CT images.

Entities:  

Keywords:  CT imaging; Cardiac imaging; Convolutional neural networks; Deep Learning; Heart chamber segmentation; Image segmentation; Whole heart segmentation

Year:  2018        PMID: 30197464      PMCID: PMC6123221          DOI: 10.1117/12.2293554

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  13 in total

1.  Segmentation of 4D cardiac MR images using a probabilistic atlas and the EM algorithm.

Authors:  Maria Lorenzo-Valdés; Gerardo I Sanchez-Ortiz; Andrew G Elkington; Raad H Mohiaddin; Daniel Rueckert
Journal:  Med Image Anal       Date:  2004-09       Impact factor: 8.545

2.  4D deformable models with temporal constraints: application to 4D cardiac image segmentation.

Authors:  Johan Montagnat; Hervé Delingette
Journal:  Med Image Anal       Date:  2005-02       Impact factor: 8.545

3.  Four-chamber heart modeling and automatic segmentation for 3-D cardiac CT volumes using marginal space learning and steerable features.

Authors:  Yefeng Zheng; Adrian Barbu; Bogdan Georgescu; Michael Scheuering; Dorin Comaniciu
Journal:  IEEE Trans Med Imaging       Date:  2008-11       Impact factor: 10.048

4.  Automatic model-based segmentation of the heart in CT images.

Authors:  Olivier Ecabert; Jochen Peters; Hauke Schramm; Cristian Lorenz; Jens von Berg; Matthew J Walker; Mani Vembar; Mark E Olszewski; Krishna Subramanyan; Guy Lavi; Jürgen Weese
Journal:  IEEE Trans Med Imaging       Date:  2008-09       Impact factor: 10.048

5.  Adaptive local multi-atlas segmentation: application to the heart and the caudate nucleus.

Authors:  Eva M van Rikxoort; Ivana Isgum; Yulia Arzhaeva; Marius Staring; Stefan Klein; Max A Viergever; Josien P W Pluim; Bram van Ginneken
Journal:  Med Image Anal       Date:  2009-10-13       Impact factor: 8.545

6.  Characterization of adrenal masses using unenhanced CT: an analysis of the CT literature.

Authors:  G W Boland; M J Lee; G S Gazelle; E F Halpern; M M McNicholas; P R Mueller
Journal:  AJR Am J Roentgenol       Date:  1998-07       Impact factor: 3.959

7.  Evaluation of a multi-atlas based method for segmentation of cardiac CTA data: a large-scale, multicenter, and multivendor study.

Authors:  H A Kirişli; M Schaap; S Klein; S L Papadopoulou; M Bonardi; C H Chen; A C Weustink; N R Mollet; E J Vonken; R J van der Geest; T van Walsum; W J Niessen
Journal:  Med Phys       Date:  2010-12       Impact factor: 4.071

Review 8.  CT of congenital heart disease: normal anatomy and typical pathologic conditions.

Authors:  Hyun Woo Goo; In-Sook Park; Jae Kon Ko; Yong Hwue Kim; Dong-Man Seo; Tae-Jin Yun; Jeong-Jun Park; Chong Hyun Yoon
Journal:  Radiographics       Date:  2003-10       Impact factor: 5.333

9.  Improvement of CT-based treatment-planning models of abdominal targets using static exhale imaging.

Authors:  J M Balter; K L Lam; C J McGinn; T S Lawrence; R K Ten Haken
Journal:  Int J Radiat Oncol Biol Phys       Date:  1998-07-01       Impact factor: 7.038

Review 10.  A review of heart chamber segmentation for structural and functional analysis using cardiac magnetic resonance imaging.

Authors:  Peng Peng; Karim Lekadir; Ali Gooya; Ling Shao; Steffen E Petersen; Alejandro F Frangi
Journal:  MAGMA       Date:  2016-01-25       Impact factor: 2.310

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  7 in total

1.  Effects of sample size and data augmentation on U-Net-based automatic segmentation of various organs.

Authors:  Takafumi Nemoto; Natsumi Futakami; Etsuo Kunieda; Masamichi Yagi; Atsuya Takeda; Takeshi Akiba; Eride Mutu; Naoyuki Shigematsu
Journal:  Radiol Phys Technol       Date:  2021-07-12

2.  Cardio-pulmonary substructure segmentation of radiotherapy computed tomography images using convolutional neural networks for clinical outcomes analysis.

Authors:  Rabia Haq; Alexandra Hotca; Aditya Apte; Andreas Rimner; Joseph O Deasy; Maria Thor
Journal:  Phys Imaging Radiat Oncol       Date:  2020-06-10

3.  Generalizable Framework for Atrial Volume Estimation for Cardiac CT Images Using Deep Learning With Quality Control Assessment.

Authors:  Musa Abdulkareem; Mark S Brahier; Fengwei Zou; Alexandra Taylor; Athanasios Thomaides; Peter J Bergquist; Monvadi B Srichai; Aaron M Lee; Jose D Vargas; Steffen E Petersen
Journal:  Front Cardiovasc Med       Date:  2022-01-28

4.  Heart and bladder detection and segmentation on FDG PET/CT by deep learning.

Authors:  Xiaoyong Wang; Skander Jemaa; Jill Fredrickson; Alexandre Fernandez Coimbra; Tina Nielsen; Alex De Crespigny; Thomas Bengtsson; Richard A D Carano
Journal:  BMC Med Imaging       Date:  2022-03-30       Impact factor: 1.930

5.  The Contribution of Thoracic Radiation Dose Volumes to Subsequent Development of Cardiovascular Disease in Cancer Survivors.

Authors:  Carolyn Miller Reilly; Melinda Higgins; Javed Butler; Natia Esiashvili; Baowei Fei; Tommy Flynn; James D Dormer; Eduard Schreibmann
Journal:  J Cardiovasc Nurs       Date:  2022 Sep-Oct 01       Impact factor: 2.468

Review 6.  Deep Learning for Cardiac Image Segmentation: A Review.

Authors:  Chen Chen; Chen Qin; Huaqi Qiu; Giacomo Tarroni; Jinming Duan; Wenjia Bai; Daniel Rueckert
Journal:  Front Cardiovasc Med       Date:  2020-03-05

7.  Automatic Aortic Valve Cusps Segmentation from CT Images Based on the Cascading Multiple Deep Neural Networks.

Authors:  Gakuto Aoyama; Longfei Zhao; Shun Zhao; Xiao Xue; Yunxin Zhong; Haruo Yamauchi; Hiroyuki Tsukihara; Eriko Maeda; Kenji Ino; Naoki Tomii; Shu Takagi; Ichiro Sakuma; Minoru Ono; Takuya Sakaguchi
Journal:  J Imaging       Date:  2022-01-14
  7 in total

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