| Literature DB >> 30197413 |
Xianmin Wang1, Jing Wang2, Changhai Zhao3, Jiaoran Song4, Ge Tian2, Yuhua Li5.
Abstract
BACKGROUND This study investigated the relationship between hyperuricemia (with phlegm/non-phlegm block) and ABCG2 gene polymorphism in Han and Uygur people from Xinjiang, China. MATERIAL AND METHODS We recruited 600 hyperuricemia patients with phlegm/non-phlegm block. Genomic DNA was extracted from the whole blood. Gene polymorphism was classified by SnaPshot method. RESULTS The SNP loci rs2725220 and rs2231137 of the ABCG2 gene, but not rs2231142, were significantly different between patients with non-phlegm block and phlegm block (P<0.05). The rs2231142 allele G was the protective factor in Uygur hyperuricemia patients. In both Han and hyperuricemia patients, the rs2725220 allele G was a protective factor and the rs2231137 allele C was a risk factor. For non-phlegm-block hyperuricemia, the rs2231142 and rs2231137 genotypes were significantly different between Uygur and Han patients (P<0.05). The rs2231142 allele G was 1.563 times higher in the Uygur patients compared with Han, and rs2231137 allele C was 1.673 times higher in the Uygur patients compared with the Han. For phlegm-block hyperuricemia, rs2231142 allele G was 1.397 times higher in the Uygur patients compared with the Han. CONCLUSIONS ABCG2 gene rs2231137 with more allele C tends to be phlegm-block type and rs2725220 with more allele G tends to be non-phlegm-block type. In the Uygur hyperuricemia patients, ABCG2 gene rs2231142 with more allele G tends to be non-phlegm-block type. Allele C of rs2231137 and allele G of rs2231142 in ABCG2 gene are more likely to be found in the Uygur people.Entities:
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Year: 2018 PMID: 30197413 PMCID: PMC6142870 DOI: 10.12659/MSM.908552
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
Hardy-Weinberg equilibrium of rs2725220, rs2231137 and rs2231142 site on ABCG2 gene.
| Ethnicity | SNP site | Allele (1/2) | Groups | Frequency of gene types, observed (expected) | HWP value | ||
|---|---|---|---|---|---|---|---|
| 1/1 | 1/2 | 2/2 | |||||
| Han (n=300) | G/T | Phlegm block type (n=150) | 36 (34.08) | 71 (74.84) | 43 (41.08) | 0.530 | |
| Non-phlegm block type (n=149) | 42 (45.13) | 80 (73.74) | 27 (30.13) | 0.300 | |||
| rs2725220 | C/G | Phlegm block type (n=151) | 82 (81.6) | 58 (58.81) | 11 (10.6) | 0.866 | |
| Non-phlegm block type (n=149) | 56 (55.58) | 70 (70.85) | 23 (22.58) | 0.884 | |||
| rs2231137 | C/T | Phlegm block type (n=151) | 140 (140.2) | 11 (10.6) | 0 (0.2) | 0.642 | |
| Non-phlegm block type (n=149) | 84 (85.7) | 58 (54.6) | 7 (8.7) | 0.448 | |||
| Uygur (n=300) | rs2231142 | G/T | Phlegm block type (n=150) | 47 (47.04) | 74 (73.92) | 29 (29.04) | 0.989 |
| Non-phlegm block type (n=150) | 61 (64.68) | 75 (67.64) | 14 (17.68) | 0.182 | |||
| rs2725220 | C/G | Phlegm block type (n=150) | 89 (85.88) | 49 (55.24) | 12 (8.88) | 0.167 | |
| Non-phlegm block type (n=150) | 47 (42.67) | 66 (74.67) | 37 (32.67) | 0.155 | |||
| rs2231137 | C/T | Phlegm block type (n=150) | 136 (135.38) | 13 (14.25) | 1 (0.38) | 0.283 | |
| Non-phlegm block type (n=150) | 105 (105.84) | 42 (40.32) | 3 (3.84) | 0.610 | |||
1 – common allele; 2 – rare allele. HWP – Hardy-Weinberg equilibrium test p value.
One patient of the phlegm block type in the Han group did not generate sequencing result at SNP site rs2231142.
Genotype distribution of phlegm block type and non-phlegm block type in Han and Uygur.
| Ethnicity | SNP sites | Allele (1/2) | Groups | Genotype n (%) | χ2 | P value | Bon | ||
|---|---|---|---|---|---|---|---|---|---|
| 1/1 | 1/2 | 2/2 | |||||||
| Han (n=300) | rs2231142 | G/T | Phlegm block type | 36 (0.240) | 71 (0.473) | 43 (0.287) | 0.047 | 0.098 | 0.0125 |
| Non-phlegm block type | 42 (0.282) | 80 (0.537) | 27 (0.181) | ||||||
| rs2725220 | C/G | Phlegm block type | 82 (0.543) | 58 (0.384) | 11 (0.073) | 0.102 | 0.006 | 0.0125 | |
| Non-phlegm block type | 56 (0.376) | 70 (0.470) | 23 (0.154) | ||||||
| rs2231137 | C/T | Phlegm block type | 140 (0.927) | 11 (0.073) | 0 (0.000) | 0.530 | 0.000 | 0.0125 | |
| Non-phlegm block type | 84 (0.564) | 58 (0.389) | 7 (0.047) | ||||||
| Uygur (n=300) | rs2231142 | G/T | Phlegm block type | 47 (0.313) | 74 (0.493) | 29 (0.193) | 0.071 | 0.029 | 0.0125 |
| Non-phlegm block type | 61 (0.407) | 75 (0.500) | 14 (0.093) | ||||||
| rs2725220 | C/G | Phlegm block type | 89 (0.593) | 49 (0.327) | 12 (0.080) | 0.282 | 0.000 | 0.0125 | |
| Non-phlegm block type | 47 (0.313) | 66 (0.440) | 37 (0.247) | ||||||
| rs2231137 | C/T | Phlegm block type | 136 (0.907) | 13 (0.087) | 1 (0.007) | 0.203 | 0.000 | 0.0125 | |
| Non-phlegm block type | 105 (0.700) | 42 (0.280) | 3 (0.020) | ||||||
One patient of the phlegm block type in the Han group did not generate sequencing result at SNP site rs2231142.
Bon – p value in the step down Bonferroni test.
Distribution of SNP alleles between non-phlegm block type and phlegm block type of Han and Uygur hyperuricemia patients.
| Ethnicity | SNP sites | Allele | Phlegm block type | Non-phlegm block type | χ2 | P value | Bon | OR value | 95% CI |
|---|---|---|---|---|---|---|---|---|---|
| Han (n=300) | rs2231142 | G | 143 (0.477) | 164 (0.55) | 3.248 | 0.072 | 0.0125 | 0.744 | [0.536~1.026] |
| T | 157 (0.523) | 134 (0.45) | 1 | ref | |||||
| rs2725220 | G | 80 (0.265) | 116 (0.389) | 10.546 | 0.001 | 0.0125 | 0.565 | [0.409~0.798] | |
| C | 222 (0.735) | 182 (0.611) | 1 | ref | |||||
| rs2231137 | C | 291 (0.964) | 226 (0.758) | 52.979 | 0.000 | 0.0125 | 8.428 | [4.364~16.27] | |
| T | 11 (0.036) | 72 (0.242) | 1 | ref | |||||
| Uygur (n=300) | rs2231142 | G | 168 (0.56) | 197 (0.657) | 5.883 | 0.015 | 0.0125 | 0.665 | [0.474~0.925] |
| T | 132 (0.44) | 103 (0.343) | 1 | ref | |||||
| rs2725220 | G | 73 (0.243) | 140 (0.467) | 32.675 | 0.000 | 0.0125 | 0.368 | [0.250~0.520] | |
| C | 227 (0.757) | 160 (0.533) | 1 | ref | |||||
| rs2231137 | C | 285 (0.95) | 252 (0.84) | 19.314 | 0.000 | 0.0125 | 3.619 | [1.978~6.621] | |
| T | 15 (0.05) | 48 (0.16) | 1 | ref |
When P<0.05, OR >1 and 95% CI lower limit >1, it indicates a risk factor; when P<0.05, OR <1 and 95% CI upper limit <1, it indicates a protective factor; ref referred to a control factor.
One patient of the phlegm block type in the Han group did not generate sequencing result at SNP site rs2231142;
Bon – p value in the step down Bonferroni test.
Genotype distribution of phlegm block type and non-phlegm block type between Han and Uygur.
| Groups | SNP sites | Allele (1/2) | Ethnicity | Genotype n (%) | χ2 | P value | Bon | ||
|---|---|---|---|---|---|---|---|---|---|
| 1/1 | 1/2 | 2/2 | |||||||
| Phlegm block type (n=301) | rs2231142 | T/G | Uygur | 29 (0.193) | 74 (0.493) | 47 (0.313) | 0.042 | 0.120 | 0.0125 |
| Han | 43 (0.287) | 71 (0.473) | 36 (0.240) | ||||||
| rs2725220 | C/G | Uygur | 89 (0.593) | 49 (0.327) | 12 (0.080) | 0.011 | 0.582 | 0.0125 | |
| Han | 82 (0.543) | 58 (0.384) | 11 (0.073) | ||||||
| rs2231137 | C/T | Uygur | 136 (0.907) | 13 (0.087) | 1 (0.007) | 0.012 | 0.543 | 0.0125 | |
| Han | 140 (0.927) | 11 (0.073) | 0 (0.000) | ||||||
| Non-phlegm block type (n=299) | rs2231142 | G/T | Uygur | 61 (0.407) | 75 (0.500) | 14 (0.093) | 0.078 | 0.020 | 0.0125 |
| Han | 42 (0.282) | 80 (0.537) | 27 (0.181) | ||||||
| rs2725220 | C/G | Uygur | 47 (0.313) | 66 (0.440) | 37 (0.247) | 0.042 | 0.124 | 0.0125 | |
| Han | 56 (0.376) | 70 (0.470) | 23 (0.154) | ||||||
| rs2231137 | C/T | Uygur | 105 (0.700) | 42 (0.280) | 3 (0.020) | 0.065 | 0.039 | 0.0125 | |
| Han | 84 (0.564) | 58 (0.389) | 7 (0.047) | ||||||
One patient of the phlegm block type in the Han group did not generate sequencing result at SNP site rs2231142.
Bon – p value in the step down Bonferroni test.
Distribution of different SNP alleles between Han and Uygur hyperuricemia patient (non-phlegm block type/phlegm block type).
| Groups | SNP sites | Allele | Uygur n=300 (%) | Han n=300 (%) | χ2 | P value | Bon | OR value | 95% CI |
|---|---|---|---|---|---|---|---|---|---|
| Phlegm block type(n=301) | rs2231142 | G | 168 (0.56) | 143 (0.477) | 4.172 | 0.041 | 0.0125 | 1.397 | [1.013~1.927] |
| T | 132 (0.44) | 157 (0.523) | 1 | ref | |||||
| rs2725220 | G | 73 (0.243) | 80 (0.265) | 0.369 | 0.543 | 0.0125 | 0.892 | [0.619~1.288] | |
| C | 227 (0.757) | 222 (0.735) | 1 | ref | |||||
| rs2231137 | C | 285 (0.95) | 291 (0.964) | 0.671 | 0.413 | 0.0125 | 0.718 | [0.322~1.590] | |
| T | 15 (0.05) | 11 (0.036) | 1 | ref | |||||
| Non-phlegm block type(n=299) | rs2231142 | G | 197 (0.657) | 164 (0.55) | 7.065 | 0.008 | 0.0125 | 1.563 | [1.125~2.173] |
| T | 103 (0.343) | 134 (0.45) | 1 | ref | |||||
| rs2725220 | G | 140 (0.467) | 116 (0.389) | 3.659 | 0.056 | 0.0125 | 1.373 | [0.992~1.900] | |
| C | 160 (0.533) | 182 (0.611) | 1 | ref | |||||
| rs2231137 | C | 252 (0.84) | 226 (0.758) | 6.208 | 0.013 | 0.0125 | 1.673 | [1.118~2.512] | |
| T | 48 (0.16) | 72 (0.242) | 1 | ref |
When P<0.05, OR >1 and 95% CI lower limit >1, it indicates a risk factor; when P<0.05, OR <1 and 95% CI upper limit <1, it indicates a protective factor; ref referred to a control factor; Bon – p value in the step down Bonferroni test.