Literature DB >> 30196456

Isolation and characterization of nine microsatellite markers for the red alga Corallina officinalis.

Ana I Tavares1, Katy R Nicastro2, Regina Kolzenburg3, Federica Ragazzola3, Rita Jacinto2, Gerardo I Zardi4.   

Abstract

We report the development of nine polymorphic microsatellite markers for Corallina officinalis (Linnaeus, 1758), a calcifying intertidal red alga and important ecosystem engineer spread along the North East Atlantic. Characterization and analysis of loci were made using 15 individuals of C. officinalis from populations in Iceland and the UK. The average number of alleles per locus was 3.78 (range 2-6) and mean of gene diversity was 0.58 (range 0.38-0.77). The set of microsatellites developed here will provide a useful molecular tool for population genetic and conservation studies.

Entities:  

Keywords:  Corallina officinalis; Genetic diversity; Marginal population; Microsatellites; Red algae

Mesh：

Year:  2018        PMID： 30196456     DOI： 10.1007/s11033-018-4353-y

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN： 0301-4851            Impact factor:   2.316


  9 in total

1.  Increased throughput for fragment analysis on an ABI PRISM 377 automated sequencer using a membrane comb and STRand software.

Authors:  R J Toonen; S Hughes
Journal:  Biotechniques       Date:  2001-12       Impact factor: 1.993

2.  Utility of psbA and nSSU for phylogenetic reconstruction in the Corallinales based on New Zealand taxa.

Authors:  Judith E S Broom; Darren R Hart; Tracy J Farr; Wendy A Nelson; Kate F Neill; Adele S Harvey; William J Woelkerling
Journal:  Mol Phylogenet Evol       Date:  2007-12-28       Impact factor: 4.286

3.  Complete mitochondrial genome of a rhodolith, Sporolithon durum (Sporolithales, Rhodophyta).

Authors:  Kyeong Mi Kim; Eun Chan Yang; Jeong Ha Kim; Wendy A Nelson; Hwan Su Yoon
Journal:  Mitochondrial DNA       Date:  2013-07-31

Review 4.  Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools.

Authors:  France Dufresne; Marc Stift; Roland Vergilino; Barbara K Mable
Journal:  Mol Ecol       Date:  2013-11-27       Impact factor: 6.185

5.  Misleading morphologies and the importance of sequencing type specimens for resolving coralline taxonomy (Corallinales, Rhodophyta): Pachyarthron cretaceum is Corallina officinalis.

Authors:  Katharine R Hind; Paul W Gabrielson; Sandra C Lindstrom; Patrick T Martone
Journal:  J Phycol       Date:  2014-07-02       Impact factor: 2.923

6.  Assessing the use of the mitochondrial cox1 marker for use in DNA barcoding of red algae (Rhodophyta).

Authors:  Lavinia Robba; Stephen J Russell; Gary L Barker; Juliet Brodie
Journal:  Am J Bot       Date:  2006-08       Impact factor: 3.844

7.  BIODIVERSITY OF CORALLINE ALGAE IN THE NORTHEASTERN ATLANTIC INCLUDING CORALLINA CAESPITOSA SP. NOV. (CORALLINOIDEAE, RHODOPHYTA)(1).

Authors:  Rachel H Walker; Juliet Brodie; Stephen Russell; Linda M Irvine; Sotiris Orfanidis
Journal:  J Phycol       Date:  2009-02       Impact factor: 2.923

8.  A Molecular Phylogenetic Study of the Tribe Corallineae (Corallinales, Rhodophyta) with an Assessment of Genus-Level Taxonomic Features and Descriptions of Novel Genera.

Authors:  Katharine R Hind; Gary W Saunders
Journal:  J Phycol       Date:  2012-12-18       Impact factor: 2.923

Review 9.  Coralline algae (Rhodophyta) in a changing world: integrating ecological, physiological, and geochemical responses to global change.

Authors:  Sophie J McCoy; Nicholas A Kamenos
Journal:  J Phycol       Date:  2015-01-23       Impact factor: 2.923
  9 in total

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