Literature DB >> 30190629

Auto-contouring via Automatic Anatomy Recognition of Organs at Risk in Head and Neck Cancer on CT images.

Xingyu Wu1, Jayaram K Udupa1, Yubing Tong1, Dewey Odhner1, Gargi V Pednekar2, Charles B Simone3, David McLaughlin2, Chavanon Apinorasethkul4, John Lukens4, Dimitris Mihailidis4, Geraldine Shammo4, Paul James4, Joseph Camaratta2, Drew A Torigian1.   

Abstract

Contouring of the organs at risk is a vital part of routine radiation therapy planning. For the head and neck (H&amp;N) region, this is more challenging due to the complexity of anatomy, the presence of streak artifacts, and the variations of object appearance. In this paper, we describe the latest advances in our Automatic Anatomy Recognition (AAR) approach, which aims to automatically contour multiple objects in the head and neck region on planning CT images. Our method has three major steps: model building, object recognition, and object delineation. First, the better-quality images from our cohort of H&amp;N CT studies are used to build fuzzy models and find the optimal hierarchy for arranging objects based on the relationship between objects. Then, the object recognition step exploits the rich prior anatomic information encoded in the hierarchy to derive the location and pose for each object, which leads to generalizable and robust methods and mitigation of object localization challenges. Finally, the delineation algorithms employ local features to contour the boundary based on object recognition results. We make several improvements within the AAR framework, including finding recognition-error-driven optimal hierarchy, modeling boundary relationships, combining texture and intensity, and evaluating object quality. Experiments were conducted on the largest ensemble of clinical data sets reported to date, including 216 planning CT studies and over 2,600 object samples. The preliminary results show that on data sets with minimal (<4 slices) streak artifacts and other deviations, overall recognition accuracy reaches 2 voxels, with overall delineation Dice coefficient close to 0.8 and Hausdorff Distance within 1 voxel.

Entities:  

Keywords:  Auto-contouring; CT segmentation; automatic anatomy recognition; organs at risk; radiation therapy

Year:  2018        PMID: 30190629      PMCID: PMC6122857          DOI: 10.1117/12.2293946

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  9 in total

1.  Clinical validation of atlas-based auto-segmentation of multiple target volumes and normal tissue (swallowing/mastication) structures in the head and neck.

Authors:  David N Teguh; Peter C Levendag; Peter W J Voet; Abrahim Al-Mamgani; Xiao Han; Theresa K Wolf; Lyndon S Hibbard; Peter Nowak; Hafid Akhiat; Maarten L P Dirkx; Ben J M Heijmen; Mischa S Hoogeman
Journal:  Int J Radiat Oncol Biol Phys       Date:  2010-10-06       Impact factor: 7.038

2.  CT-based delineation of organs at risk in the head and neck region: DAHANCA, EORTC, GORTEC, HKNPCSG, NCIC CTG, NCRI, NRG Oncology and TROG consensus guidelines.

Authors:  Charlotte L Brouwer; Roel J H M Steenbakkers; Jean Bourhis; Wilfried Budach; Cai Grau; Vincent Grégoire; Marcel van Herk; Anne Lee; Philippe Maingon; Chris Nutting; Brian O'Sullivan; Sandro V Porceddu; David I Rosenthal; Nanna M Sijtsema; Johannes A Langendijk
Journal:  Radiother Oncol       Date:  2015-08-13       Impact factor: 6.280

3.  Multi-subject atlas-based auto-segmentation reduces interobserver variation and improves dosimetric parameter consistency for organs at risk in nasopharyngeal carcinoma: A multi-institution clinical study.

Authors:  Chang-Juan Tao; Jun-Lin Yi; Nian-Yong Chen; Wei Ren; Jason Cheng; Stewart Tung; Lin Kong; Shao-Jun Lin; Jian-Ji Pan; Guang-Shun Zhang; Jiang Hu; Zhen-Yu Qi; Jun Ma; Jia-De Lu; Di Yan; Ying Sun
Journal:  Radiother Oncol       Date:  2015-05-26       Impact factor: 6.280

4.  Image Quality and Segmentation.

Authors:  Gargi V Pednekar; Jayaram K Udupa; David J McLaughlin; Xingyu Wu; Yubing Tong; Charles B Simone; Joseph Camaratta; Drew A Torigian
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03-13

5.  Does atlas-based autosegmentation of neck levels require subsequent manual contour editing to avoid risk of severe target underdosage? A dosimetric analysis.

Authors:  Peter W J Voet; Maarten L P Dirkx; David N Teguh; Mischa S Hoogeman; Peter C Levendag; Ben J M Heijmen
Journal:  Radiother Oncol       Date:  2011-01-25       Impact factor: 6.280

6.  Segmentation of organs-at-risks in head and neck CT images using convolutional neural networks.

Authors:  Bulat Ibragimov; Lei Xing
Journal:  Med Phys       Date:  2017-02       Impact factor: 4.071

7.  Body-wide hierarchical fuzzy modeling, recognition, and delineation of anatomy in medical images.

Authors:  Jayaram K Udupa; Dewey Odhner; Liming Zhao; Yubing Tong; Monica M S Matsumoto; Krzysztof C Ciesielski; Alexandre X Falcao; Pavithra Vaideeswaran; Victoria Ciesielski; Babak Saboury; Syedmehrdad Mohammadianrasanani; Sanghun Sin; Raanan Arens; Drew A Torigian
Journal:  Med Image Anal       Date:  2014-04-24       Impact factor: 8.545

8.  Validation of clinical acceptability of an atlas-based segmentation algorithm for the delineation of organs at risk in head and neck cancer.

Authors:  Albert K Hoang Duc; Gemma Eminowicz; Ruheena Mendes; Swee-Ling Wong; Jamie McClelland; Marc Modat; M Jorge Cardoso; Alex F Mendelson; Catarina Veiga; Timor Kadir; Derek D'Souza; Sebastien Ourselin
Journal:  Med Phys       Date:  2015-09       Impact factor: 4.071

9.  Evaluation of an automatic segmentation algorithm for definition of head and neck organs at risk.

Authors:  David Thomson; Chris Boylan; Tom Liptrot; Adam Aitkenhead; Lip Lee; Beng Yap; Andrew Sykes; Carl Rowbottom; Nicholas Slevin
Journal:  Radiat Oncol       Date:  2014-08-03       Impact factor: 3.481

  9 in total
  2 in total

1.  AAR-RT - A system for auto-contouring organs at risk on CT images for radiation therapy planning: Principles, design, and large-scale evaluation on head-and-neck and thoracic cancer cases.

Authors:  Xingyu Wu; Jayaram K Udupa; Yubing Tong; Dewey Odhner; Gargi V Pednekar; Charles B Simone; David McLaughlin; Chavanon Apinorasethkul; Ontida Apinorasethkul; John Lukens; Dimitris Mihailidis; Geraldine Shammo; Paul James; Akhil Tiwari; Lisa Wojtowicz; Joseph Camaratta; Drew A Torigian
Journal:  Med Image Anal       Date:  2019-01-29       Impact factor: 8.545

Review 2.  Automated segmentation of the larynx on computed tomography images: a review.

Authors:  Divya Rao; Prakashini K; Vijayananda J; Rohit Singh
Journal:  Biomed Eng Lett       Date:  2022-03-18
  2 in total

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