| Literature DB >> 30186479 |
Wangfeng Zhu1, Xiuhui Yang1,2, Yong Zhou2, Yansheng Yan1,2.
Abstract
Enterovirus 71 (EV71) immunomagnetic enrichment technique and routine detection methods were combined to detect swab environmental specimens to elucidate the role of environmental specimens in the spread of EV71. Immunomagnetic beads with specific enrichment of EV71 virus were prepared, then the beads were used to absorb the EV71 virus from environmental samples. Obtained immunomagnetic bead-virus complexes were detected by RT-PCR, RT-qPCR and cell culture. Isolated virus were subjected to VP1 full-length amplification and homology analysis was performed. A total of 4 µg of EV71 monoclonal antibody was mixed with 50 µl magnetic beads, and the highest coating efficiency was reached after incubating at room temperature for 2 h. Satisfactory enrichment effect was achieved by adding 50 µl immunomagnetic beads to 1.5 ml sample and shaking at room temperature for 2 h. The method of EV71 enrichment has high sensitivity and specificity. A total of 346 specimens after enrichment by immunomagnetic beads, the positive rates of RT-qPCR, RT-PCR and cell culture were 20.52, 5.78, and 9.25%, respectively, which were also significantly higher than those before enrichment (15.90, 3.47 and 4.05%; P<0.05). After enrichment with immunomagnetic beads, isolation rate of EV71 virus from case specimens and home environment specimens increased from 27.45 to 43.14% and from 0 to 5.29%, respectively. In home environment-positive specimens, positive rate of toys and stationery was high (52.00 and 24.00%, respectively). In kindergarten environmental samples, the positive rate of RT-qPCR was 6.12%, and EV71 virus was not isolated. Sequence analysis showed that the nucleotide homology of case isolates and home environment isolates was 98.0-100%.Entities:
Keywords: detection; enrichment; enterovirus 71; environmental swab; immunomagnetic beads
Year: 2018 PMID: 30186479 PMCID: PMC6122488 DOI: 10.3892/etm.2018.6484
Source DB: PubMed Journal: Exp Ther Med ISSN: 1792-0981 Impact factor: 2.447
Figure 1.Procedure of enrichment of EV71 using immunomagnetic beads. EV71, enterovirus 71.
Figure 2.Optimization of coated antibody quantity.
Figure 3.Optimization of coating time.
Specimens collected from four epidemics of EV71 infection.
| Throat swab | Hand swab | Patients home environment swab | Kindergarten environment swab | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Regions | Patients | Guardians | Guardians | Toys | Stationery | Toiletries | Table surface | Tableware | Total | Table surface | Railing | Toys | Playground | Others | Total |
| Longyan | 18 | 18 | 0 | 9 | 9 | 9 | 9 | 9 | 45 | 3 | 4 | 4 | 3 | 2 | 16 |
| Xiamen | 8 | 8 | 7 | 7 | 7 | 7 | 7 | 7 | 35 | 3 | 4 | 5 | 4 | 0 | 16 |
| Ningde | 8 | 8 | 7 | 7 | 7 | 7 | 7 | 7 | 35 | 4 | 4 | 4 | 4 | 1 | 17 |
| Sanming | 17 | 17 | 11 | 11 | 11 | 11 | 11 | 11 | 55 | 0 | 0 | 0 | 0 | 0 | 0 |
| Total | 51 | 51 | 25 | 34 | 34 | 34 | 34 | 34 | 170 | 10 | 12 | 13 | 11 | 3 | 49 |
Results of EV71 detection from different types of samples.
| IME | Non-IME | |||||||
|---|---|---|---|---|---|---|---|---|
| Sample from | Sample types | Number | RT-qPCR | RT-PCR | Cell culture | RT-qPCR | RT-PCR | Cell culture |
| Patient | Throat swab | 51 | 37 | 16 | 22 | 36 | 12 | 14 |
| Guardian | Throat swab | 51 | 6 | 1 | 1 | 4 | 0 | 0 |
| Guardian | Hand swab | 25 | 0 | 0 | 0 | 0 | 0 | 0 |
| Household item | Wipe swab | 170 | 25 | 3 | 9 | 14 | 0 | 0 |
| Kindergarten | Wipe swab | 49 | 3 | 0 | 0 | 1 | 0 | 0 |
| Total | 346 | 71 | 20 | 32 | 55 | 12 | 14 | |
IME represents sample processed by IME, non-IME represents sample not processed by IME, numbers in table represent the number of tested samples and positive samples. Among throat swab samples from 51 patients, two samples were positive for IME-RT-qPCR, but negative for non-IME-RT-qPCR, one sample was positive for non-IME-RT-qPCR, but negative for IME-RT-qPCR. For the positive sample for non-IME RT-PCR and non-IME cell culture, the results of IME-RT-PCR and IME-cell-culture were also positive. IME, immunomagnetic enrichment.
Comparison of EV71 detection results between IME and non-IME.
| Non-IME | |||||
|---|---|---|---|---|---|
| Sample | Method | Positive | Negative | McNemar test | |
| Patient | RT-qPCR | Positive | 35 | 2 | |
| Negative | 1 | 13 | |||
| RT-PCR | Positive | 11 | 5 | χ2=1.500, P>0.05 | |
| Negative | 1 | 34 | |||
| Cell culture | Positive | 14 | 8 | χ2=6.125, P<0.05 | |
| Negative | 0 | 29 | |||
| Household item | RT-qPCR | Positive | 11 | 14 | χ2=5.882, P<0.05 |
| Negative | 3 | 142 | |||
| RT-PCR | Positive | 0 | 3 | ||
| Negative | 0 | 167 | |||
| Cell culture | Positive | 0 | 9 | ||
| Negative | 0 | 161 | |||
| Total | RT-qPCR | Positive | 54 | 17 | χ2=12.5, P<0.0001 |
| Negative | 1 | 274 | |||
| RT-PCR | Positive | 11 | 9 | χ2=4.9, P=0.021 | |
| Negative | 1 | 325 | |||
| Cell culture | Positive | 14 | 18 | χ2=16.05, P<0.0001 | |
| Negative | 0 | 314 | |||
IME, immunomagnetic enrichment.
The detection results of EV71 in environmental samples via IME.
| Detection | |||||
| Sample from | Sample types | Number | Positive | Negative | Fishers exact test |
| Household item | Toy | 34 | 13 | 21 | P<0.05 |
| Stationery | 34 | 6 | 28 | ||
| Toiletry | 34 | 2 | 32 | ||
| Tableware | 34 | 2 | 32 | ||
| Tabletop | 34 | 2 | 32 | ||
| Kindergarten | Toy | 13 | 1 | 12 | P>0.05 |
| Tabletop | 10 | 0 | 10 | ||
| Handrail | 12 | 0 | 12 | ||
| Playground | 11 | 1 | 10 | ||
| Others | 3 | 1 | 2 | ||
| Total | 219 | 28 | 191 | ||
All samples were processed by IME. IME, immunomagnetic enrichment.
Comparison of nucleotide and amino acid homology of EV71 isolates in different regions.
| Nucleotide homology (%) | ||||
|---|---|---|---|---|
| Xiamen | Ningde | Longyan | Sanming | |
| Xiamen | 100 | |||
| Ningde | 92.8 | 100 | ||
| Longyan | 93.7–93.8 | 96.1–96.2 | 99.8–100 | |
| Sanming | 94.0–94.6 | 96.6–96.9 | 97.4–98.3 | 98.0–100 |
| Xiamen | 100 | |||
| Ningde | 98.9 | 100 | ||
| Longyan | 97.9–98.3 | 98.9–99.3 | 99.6–100 | |
| Sanming | 98.6 | 99.6 | 99.3–99.6 | 100 |
Figure 4.Phylogenetic tree constructed based on partial VP1 nucleotide sequences of EV71. Phylogenetic tree was constructed using the neighbor-joining method based on the alignment of the partial VP1 region sequences of Fujian strains and other strains downloaded from GenBank. Bootstrap values for 1,000 replicates were calculated. •Clinical strains, ▲household strains, ¡scaregiver strain. CA16 strain (U05876) was used as an out-group. EV71, enterovirus 71.