Literature DB >> 30182778

A nanoinformatics decision support tool for the virtual screening of gold nanoparticle cellular association using protein corona fingerprints.

Antreas Afantitis1, Georgia Melagraki1, Andreas Tsoumanis1, Eugenia Valsami-Jones2, Iseult Lynch2.   

Abstract

The increasing use of nanoparticles (NPs) in a wide range of consumer and industrial applications has necessitated significant effort to address the challenge of characterizing and quantifying the underlying nanostructure - biological response relationships to ensure that these novel materials can be exploited responsibly and safely. Such efforts demand reliable experimental data not only in terms of the biological dose-response, but also regarding the physicochemical properties of the NPs and their interaction with the biological environment. The latter has not been extensively studied, as a large surface to bind biological macromolecules is a unique feature of NPs that is not relevant for chemicals or pharmaceuticals, and thus only limited data have been reported in the literature quantifying the protein corona formed when NPs interact with a biological medium and linking this with NP cellular association/uptake. In this work we report the development of a predictive model for the assessment of the biological response (cellular association, which can include both internalized NPs and those attached to the cell surface) of surface-modified gold NPs, based on their physicochemical properties and protein corona fingerprints, utilizing a dataset of 105 unique NPs. Cellular association was chosen as the end-point for the original experimental study due to its relevance to inflammatory responses, biodistribution, and toxicity in vivo. The validated predictive model is freely available online through the Enalos Cloud Platform ( http://enalos.insilicotox.com/NanoProteinCorona/ ) to be used as part of a regulatory or NP safe-by-design decision support system. This online tool will allow the virtual screening of NPs, based on a list of the significant NP descriptors, identifying those NPs that would warrant further toxicity testing on the basis of predicted NP cellular association.

Entities:  

Keywords:  Enalos Cloud platform; Nanoparticles; cell association; hazard characterization; nanoinformatics; protein corona; risk assessment; toxicity; web service

Mesh:

Substances:

Year:  2018        PMID: 30182778     DOI: 10.1080/17435390.2018.1504998

Source DB:  PubMed          Journal:  Nanotoxicology        ISSN: 1743-5390            Impact factor:   5.913


  9 in total

Review 1.  Nanotechnology and artificial intelligence to enable sustainable and precision agriculture.

Authors:  Peng Zhang; Zhiling Guo; Sami Ullah; Georgia Melagraki; Antreas Afantitis; Iseult Lynch
Journal:  Nat Plants       Date:  2021-06-24       Impact factor: 15.793

Review 2.  Experimental and Computational Nanotoxicology-Complementary Approaches for Nanomaterial Hazard Assessment.

Authors:  Valérie Forest
Journal:  Nanomaterials (Basel)       Date:  2022-04-14       Impact factor: 5.719

Review 3.  Transcriptomics in Toxicogenomics, Part III: Data Modelling for Risk Assessment.

Authors:  Angela Serra; Michele Fratello; Luca Cattelani; Irene Liampa; Georgia Melagraki; Pekka Kohonen; Penny Nymark; Antonio Federico; Pia Anneli Sofia Kinaret; Karolina Jagiello; My Kieu Ha; Jang-Sik Choi; Natasha Sanabria; Mary Gulumian; Tomasz Puzyn; Tae-Hyun Yoon; Haralambos Sarimveis; Roland Grafström; Antreas Afantitis; Dario Greco
Journal:  Nanomaterials (Basel)       Date:  2020-04-08       Impact factor: 5.076

4.  Atomistic Perspective on Biomolecular Adsorption on Functionalized Carbon Nanomaterials under Ambient Conditions.

Authors:  Marzieh Saeedimasine; Erik G Brandt; Alexander P Lyubartsev
Journal:  J Phys Chem B       Date:  2020-12-29       Impact factor: 2.991

5.  QSPR model for Caco-2 cell permeability prediction using a combination of HQPSO and dual-RBF neural network.

Authors:  Yukun Wang; Xuebo Chen
Journal:  RSC Adv       Date:  2020-11-26       Impact factor: 4.036

6.  A joint optimization QSAR model of fathead minnow acute toxicity based on a radial basis function neural network and its consensus modeling.

Authors:  Yukun Wang; Xuebo Chen
Journal:  RSC Adv       Date:  2020-06-04       Impact factor: 4.036

7.  A safe-by-design tool for functionalised nanomaterials through the Enalos Nanoinformatics Cloud platform.

Authors:  Dimitra-Danai Varsou; Antreas Afantitis; Andreas Tsoumanis; Georgia Melagraki; Haralambos Sarimveis; Eugenia Valsami-Jones; Iseult Lynch
Journal:  Nanoscale Adv       Date:  2018-11-05

8.  Predicting the Toxicity of Ionic Liquids toward Acetylcholinesterase Enzymes Using Novel QSAR Models.

Authors:  Peng Zhu; Xuejing Kang; Yongsheng Zhao; Ullah Latif; Hongzhong Zhang
Journal:  Int J Mol Sci       Date:  2019-05-02       Impact factor: 5.923

Review 9.  NanoSolveIT Project: Driving nanoinformatics research to develop innovative and integrated tools for in silico nanosafety assessment.

Authors:  Antreas Afantitis; Georgia Melagraki; Panagiotis Isigonis; Andreas Tsoumanis; Dimitra Danai Varsou; Eugenia Valsami-Jones; Anastasios Papadiamantis; Laura-Jayne A Ellis; Haralambos Sarimveis; Philip Doganis; Pantelis Karatzas; Periklis Tsiros; Irene Liampa; Vladimir Lobaskin; Dario Greco; Angela Serra; Pia Anneli Sofia Kinaret; Laura Aliisa Saarimäki; Roland Grafström; Pekka Kohonen; Penny Nymark; Egon Willighagen; Tomasz Puzyn; Anna Rybinska-Fryca; Alexander Lyubartsev; Keld Alstrup Jensen; Jan Gerit Brandenburg; Stephen Lofts; Claus Svendsen; Samuel Harrison; Dieter Maier; Kaido Tamm; Jaak Jänes; Lauri Sikk; Maria Dusinska; Eleonora Longhin; Elise Rundén-Pran; Espen Mariussen; Naouale El Yamani; Wolfgang Unger; Jörg Radnik; Alexander Tropsha; Yoram Cohen; Jerzy Leszczynski; Christine Ogilvie Hendren; Mark Wiesner; David Winkler; Noriyuki Suzuki; Tae Hyun Yoon; Jang-Sik Choi; Natasha Sanabria; Mary Gulumian; Iseult Lynch
Journal:  Comput Struct Biotechnol J       Date:  2020-03-07       Impact factor: 7.271

  9 in total

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