| Literature DB >> 30176854 |
Yu Su1,2, Xue Gao1,3, Sha-Sha Huang1, Jing-Ning Mao4, Bang-Qing Huang2, Jian-Dong Zhao1, Dong-Yang Kang1, Xin Zhang1, Pu Dai5.
Abstract
BACKGROUND: Many X-linked non-syndromic hearing loss (HL) cases are caused by various mutations in the POU domain class 3 transcription factor 4 (POU3F4) gene. This study aimed to identify allelic variants of this gene in two Chinese families displaying X-linked inheritance deafness-2 (DFNX2) and one sporadic case with indefinite inheritance pattern.Entities:
Keywords: DFNX2; Mutation; POU3F4; X-linked deafness
Mesh:
Substances:
Year: 2018 PMID: 30176854 PMCID: PMC6122742 DOI: 10.1186/s12881-018-0630-9
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Reported Mutations in the POU3F4 Gene Resulting in DFNX2 Phenotypes
| Nucleotide change | Amino acid changea | Protein domainb | Feature of deafnessc | Defects on temporal bone CT | Location | References |
|---|---|---|---|---|---|---|
| del 2.6 kb, 6.5 kb, 7 kb, 4.4 kb | NA | U | NA | NA | Korea | [ |
| del 8 kb | NA | U | Mixed | Yes | Korea | [ |
| de30 kb | NA | U | Mixed | Yes | Korea | [ |
| del 20 kb | NA | U | Mixed | Yes | Korea | [ |
| del 130 kb | NA | U | Mixed | Yes | Korea | [ |
| del 200 kb | NA | U | Mixed | Yes | Korea | [ |
| del 220 kb | NA | U | Mixed | Yes | Korea | [ |
| del530 kb | NA | U | SNHL | Yes | US | [ |
| del 1200 kb | NA | U | SNHL | Yes | Spain | [ |
| del entire gene | NA | Entire gene | Mixed | Yes | Korea | [ |
| c.79C | p.Gln27* | U | SNHL | Yes | Poland, | [ |
| c.293C > A | p.Ser98* | U | Mixed | Yes | France | [ |
| c.341G > A | p.Trp114* | U | SNHL | Yes | Pakistan | [ |
| c.346delG | p.Ala116Profs | U | SNHL, Mixed | Yes | Poland,Turkey | [ |
| c.383delG | p.Gly128 fs | U | SNHL | Yes | Korea | [ |
| c.406C > T | p.Gln136* | U | SNHL | Yes | Pakistan | [ |
| c.499 C > T | p.Arg167* | U | Mixed | Yes | Korea | [ |
| c.530C > A | p.Ser177* | U | SNHL | Yes | China | [ |
| c.559G | p.Glu187* | U | SNHL | Yes | Poland, | [ |
| 601–606delTTCAAA | p.Phe201/Lys202 del | S | Mixed | Yes | Japan | [ |
| 603-610delCAAA | p.Lys202 fs | S | SNHL | Yes | Netherlands | [ |
| c.623 T > A | p. Leu208* | S | SNHL | Yes | Poland,Korea | [ |
| c.632C > T | p.Thr211Met | S | Mixed | Yes | Korea | [ |
| c.647G > A | p.Gly216 Glu | S | SNHL | Yes | China | [ |
| c.648-651delG | p.Arg215 fs | S | Mixed | Yes | Netherlands | [ |
| c.650 T | p.Leu217* | S | SNHL | Yes | Poland | [ |
| c.669 T > A | p.Tyr223* | S | SNHL | Yes | China | Present study |
| c. 683C > T | p.Ser228Leu | S | SNHL | Yes | US | [ |
| c.686A > G | p.Gln229Arg | S | SNHL | Yes | Korea | [ |
| c.689C > T | p.Thr230Ile | S | Mixed | Yes | US | [ |
| c.707A > C | p.Glu236Ala | S | SNHL | Yes | Turkey | [ |
| NA | p.Glu236Asp | S | NA | No | France | [ |
| c.727_728insA | p.Asn244Lysfs*26 | S | SNHL | Yes | Japan | [ |
| NA | p.Arg282Gln | H | NA | No | France | [ |
| NA | p.Ile285Asn | H | NA | NA | France | [ |
| c.772delG | p. Glu 258Argfs | H | SNHL | Yes | Turkey | [ |
| c.823C | p.Gln275* | H | SNHL | Yes | Poland | [ |
| c.862del4 | p.Ser288Gln fs*37 | H | Mixed | Yes | UK | [ |
| NA | p.Ser288Cys fs*40 | H | NA | No | France | [ |
| c.895delA | p.Leu298 fs | H | Mixed | Yes | Netherlands | [ |
| c.902C > T | p.Pro301Leu | H | SNHL | NA | Ecuador | [ |
| c.907C > T | p.Pro303Ser | H | Mixed | Yes | UK | [ |
| c.916C | p.Gln306* | H | SNHL | Yes | Poland, | [ |
| c.923 T | p.Ile308Asn | H | Mixed | Yes | France | [ |
| NA | p.Ile308 Ile fs*28 | H | NA | No | France | [ |
| c.925 T > C | p.Ser309Pro | H | SNHL | Yes | China | [ |
| c.927delCTC | p.Ser310del | H | Mixed | Yes | Korea, China | [ |
| c.935C > T | p.Ala312Val | H | SNHL | Yes | UK | [ |
| c.950 T > G | p.Leu317Trp | H | Mixed | Yes | Netherlands | [ |
| c.950dupT | p. Leu317Phefs*12 | H | SNHL | Yes | Korea | [ |
| c.967C > G | p.Arg323Gly | H | Mixed | Yes | Korea | [ |
| c.971 T | p.Val324Asp | H | SNHL | Yes | Poland, | [ |
| c.973delT | p.Trp325Glyfs*12 | H | Mixed | Yes | China | Present study |
| c.973 T > A | p.Trp325Arg | H | SNHL | Yes | Germany | [ |
| c. 983A > C | p.Asn328Thr | H | Mixed | Yes | UK | [ |
| c.985C > G | p.Arg329Gly | H | Mixed | Yes | US | [ |
| c.986G > C | p.Arg329Pro | H | Mixed | Yes | Korea | [ |
| c.987 T > C | p.Leu308Thr | H | SNHL | NA | Nigeria | [ |
| c.990A > T | p.Arg330Ser | H | SNHL | Yes | Netherlands | [ |
| c.1000A > G | p.Lys334Glu | H | Mixed | Yes | Netherlands | [ |
| c.1069delA | p. Thr 354Glnfs*115 | D | SNHL | Yes | Korea | [ |
| c.1084 T > C | p.X362Argexf*113 | D | SNHL | Yes | Korea | [ |
afs frameshift, NA not available, H and S indicate the POU-homeodomain and POU-specific domain respectively; U Upstream, D Downstream, SNHL sensorineural HL, Mixed mixed HL
Fig. 1Pedigree, clinical phenotypes, and mutation analysis in family 1486. a Temporal bone computed tomography (CT) images of the proband of family 1486 demonstrating dilation of the lateral end of the internal acoustic meatus (IAM) and a malformed cochlea; the basal turn of the cochlea was incompletely separated from the IAM (arrow); b Pedigree of Family 1486 with multiple congenital profound sensorineural hearing impairment cases (Affected subjects are denoted in black. Arrow indicates the proband. Mutation carrier are denoted with dot within a symbol); c Wild-type sequence of POU3F4 including sites 927–929; d A heterozygous c.927delCTC mutation was found in the female carriers; e A hemizygotic c.927delCTC mutation was detected in the affected males; f Amino acid changes caused by changes in the DNA sequence. A three-nucleotide deletion (from position 927 to 929) in the coding region of POU3F4 results in the deletion of serine at position 310
Fig. 2Pedigree, clinical phenotypes and mutation analysis in family 2741. a Pedigree of family 2741 with congenital mixed hearing impairment and sensorineural hearing impairment cases (Affected subjects are denoted in black. Arrow indicates the proband. Mutation carrier are denoted with dot within a symbol); b Audiograms of both ears for the proband, who exhibited typical audiometric features of mixed hearing impairment; c Temporal bone CT images of the proband demonstrating dilation of the bottom of the IAM and a deficit in the bony plate, which separates the basal turn of the cochlea and the IAM (arrow); d Audiograms of both ears from the uncle of the proband, who shows profound sensorineural hearing impairment; e Temporal bone CT images of the uncle of the proband demonstrating dilation of the lateral end of the IAM and bone deficiency between the basal turn of the cochlea and the IAM (arrow). f Wild-type sequence of POU3F4 including position 973; g A heterozygous c.973delT mutation was found in the female carriers; h A hemizygotic c.973delT mutation was detected in the affected males; i Amino acid change caused by changes in the DNA sequence leading to a predicted frameshift mutation and truncation of the POU3F4 protein; j Panel 1 marks the position of the c.973delT (p.Trp325Glyfs*12) mutation and panel 2 marks the position of the c.927delCTC (p.Ser310del) mutation. The POU homeodomain (from Gly276 to Arg335) is highly conserved in different species
Fig. 3Pedigree, clinical phenotypes and mutation analysis in family ZSJ. a Audiograms of both ears from the proband exhibited profound sensorineural hearing impairment; b Temporal bone CT images of the proband demonstrating dilation of the lateral end of the IAM and a deficit in the basal turn of the cochlea in the right ear (arrow) in addition to dilation of the lateral end of the IAM and an incompletely developed cochlea in the left ear (arrow); c Wild-type sequence of POU3F4, including site 669; d A hemizygotic c.669 T > A mutation was detected in the affected boy; e Pedigree of family ZSJ; f Stop codon caused by changes in the DNA sequence; g Molecular modeling of wild-type and mutant POU3F4 proteins. The c.669 T > A mutant creates a new stop codon and is predicted to result in a truncated protein lacking normal POU3F4 transcription factor function
Fig. 4Schematic illustration of the POU3F4 protein. In this study, three mutations were identified: the p.Tyr223*mutation located in the POU-specific domain, and the p.Trp325Glyfs*12 and p.Ser310del mutations located in the POU homeodomain