Literature DB >> 30176151

Domain definition and interaction mapping for the endonuclease complex hNob1/hPno1.

Finaritra Raoelijaona1, Stéphane Thore1, Sébastien Fribourg1.   

Abstract

Ribosome biogenesis requires a variety of trans-acting factors in order to produce functional ribosomal subunits. In human cells, the complex formed by the proteins hNob1 and hPno1 is crucial to the site 3 cleavage occurring at the 3'-end of 18S pre-rRNA. However, the properties and activity of this complex are still poorly understood. We present here a detailed characterization of hNob1 organization and its interaction with hPno1. We redefine the boundaries of the endonuclease PIN domain present in hNob1 and we further delineate the precise interacting modules required for complex formation in hNob1 and hPno1. Altogether, our data contributes to a better understanding of the complex biology required during the site 3 cleavage step in ribosome biogenesis.

Entities:  

Keywords:  KH domain; PIN domain; Ribosome biogenesis; endonuclease; pre-rRNA; zinc ribbon

Mesh:

Substances:

Year:  2018        PMID: 30176151      PMCID: PMC6284585          DOI: 10.1080/15476286.2018.1517013

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  30 in total

1.  Nob1 binds the single-stranded cleavage site D at the 3'-end of 18S rRNA with its PIN domain.

Authors:  Allison C Lamanna; Katrin Karbstein
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-14       Impact factor: 11.205

2.  The complete structure of the small-subunit processome.

Authors:  Jonas Barandun; Malik Chaker-Margot; Mirjam Hunziker; Kelly R Molloy; Brian T Chait; Sebastian Klinge
Journal:  Nat Struct Mol Biol       Date:  2017-09-25       Impact factor: 15.369

3.  Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit.

Authors:  Alain Scaiola; Cohue Peña; Melanie Weisser; Daniel Böhringer; Marc Leibundgut; Purnima Klingauf-Nerurkar; Stefan Gerhardy; Vikram Govind Panse; Nenad Ban
Journal:  EMBO J       Date:  2018-02-19       Impact factor: 11.598

4.  Structural snapshot of cytoplasmic pre-60S ribosomal particles bound by Nmd3, Lsg1, Tif6 and Reh1.

Authors:  Chengying Ma; Shan Wu; Ningning Li; Yan Chen; Kaige Yan; Zhifei Li; Lvqin Zheng; Jianlin Lei; John L Woolford; Ning Gao
Journal:  Nat Struct Mol Biol       Date:  2017-01-23       Impact factor: 15.369

Review 5.  Assembly and structure of the SSU processome-a nucleolar precursor of the small ribosomal subunit.

Authors:  Jonas Barandun; Mirjam Hunziker; Sebastian Klinge
Journal:  Curr Opin Struct Biol       Date:  2018-02-04       Impact factor: 6.809

6.  Nob1p is required for biogenesis of the 26S proteasome and degraded upon its maturation in Saccharomyces cerevisiae.

Authors:  Yoshiko Tone; Akio Toh-E
Journal:  Genes Dev       Date:  2002-12-15       Impact factor: 11.361

7.  Structural and functional analysis of the archaeal endonuclease Nob1.

Authors:  Thomas Veith; Roman Martin; Jan P Wurm; Benjamin L Weis; Elke Duchardt-Ferner; Charlotta Safferthal; Raoul Hennig; Oliver Mirus; Markus T Bohnsack; Jens Wöhnert; Enrico Schleiff
Journal:  Nucleic Acids Res       Date:  2011-12-10       Impact factor: 16.971

8.  Comprehensive classification of the PIN domain-like superfamily.

Authors:  Dorota Matelska; Kamil Steczkiewicz; Krzysztof Ginalski
Journal:  Nucleic Acids Res       Date:  2017-07-07       Impact factor: 16.971

9.  The Phyre2 web portal for protein modeling, prediction and analysis.

Authors:  Lawrence A Kelley; Stefans Mezulis; Christopher M Yates; Mark N Wass; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2015-05-07       Impact factor: 13.491

10.  Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae.

Authors:  André Heuer; Emma Thomson; Christian Schmidt; Otto Berninghausen; Thomas Becker; Ed Hurt; Roland Beckmann
Journal:  Elife       Date:  2017-11-20       Impact factor: 8.140

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  3 in total

1.  PNO1 regulates autophagy and apoptosis of hepatocellular carcinoma via the MAPK signaling pathway.

Authors:  Zhiqiang Han; Dongming Liu; Lu Chen; Yuchao He; Xiangdong Tian; Lisha Qi; Liwei Chen; Yi Luo; Ziye Chen; Xiaomeng Hu; Guangtao Li; Linlin Zhan; Yu Wang; Qiang Li; Peng Chen; Zhiyong Liu; Hua Guo
Journal:  Cell Death Dis       Date:  2021-05-28       Impact factor: 8.469

2.  Interactions and activities of factors involved in the late stages of human 18S rRNA maturation.

Authors:  Katherine Elizabeth Sloan; Andrew Alexander Knox; Graeme Raymond Wells; Claudia Schneider; Nicholas James Watkins
Journal:  RNA Biol       Date:  2019-01-13       Impact factor: 4.652

Review 3.  Ribosome Biogenesis Alterations in Colorectal Cancer.

Authors:  Sophie Nait Slimane; Virginie Marcel; Tanguy Fenouil; Frédéric Catez; Jean-Christophe Saurin; Philippe Bouvet; Jean-Jacques Diaz; Hichem C Mertani
Journal:  Cells       Date:  2020-10-27       Impact factor: 6.600

  3 in total

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