Literature DB >> 30174134

Genome-wide variants of Eurasian facial shape differentiation and a prospective model of DNA based face prediction.

Lu Qiao1, Yajun Yang2, Pengcheng Fu3, Sile Hu1, Hang Zhou1, Shouneng Peng1, Jingze Tan2, Yan Lu1, Haiyi Lou1, Dongsheng Lu1, Sijie Wu1, Jing Guo1, Li Jin4, Yaqun Guan5, Sijia Wang6, Shuhua Xu7, Kun Tang8.   

Abstract

It is a long-standing question as to which genes define the characteristic facial features among different ethnic groups. In this study, we use Uyghurs, an ancient admixed population to query the genetic bases why Europeans and Han Chinese look different. Facial traits were analyzed based on high-dense 3D facial images; numerous biometric spaces were examined for divergent facial features between European and Han Chinese, ranging from inter-landmark distances to dense shape geometrics. Genome-wide association studies (GWAS) were conducted on a discovery panel of Uyghurs. Six significant loci were identified, four of which, rs1868752, rs118078182, rs60159418 at or near UBASH3B, COL23A1, PCDH7 and rs17868256 were replicated in independent cohorts of Uyghurs or Southern Han Chinese. A prospective model was also developed to predict 3D faces based on top GWAS signals and tested in hypothetic forensic scenarios.
Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Ancestry-divergent phenotypes; Dense 3D facial image; Face prediction; Forensic scenario; Genome-wide association study

Mesh:

Substances:

Year:  2018        PMID: 30174134     DOI: 10.1016/j.jgg.2018.07.009

Source DB:  PubMed          Journal:  J Genet Genomics        ISSN: 1673-8527            Impact factor:   4.275


  12 in total

1.  Genetic variants underlying differences in facial morphology in East Asian and European populations.

Authors:  Manfei Zhang; Sijie Wu; Siyuan Du; Wei Qian; Jieyi Chen; Lu Qiao; Yajun Yang; Jingze Tan; Ziyu Yuan; Qianqian Peng; Yu Liu; Nicolas Navarro; Kun Tang; Andrés Ruiz-Linares; Jiucun Wang; Peter Claes; Li Jin; Jiarui Li; Sijia Wang
Journal:  Nat Genet       Date:  2022-04-07       Impact factor: 38.330

2.  Genomic diversity and post-admixture adaptation in the Uyghurs.

Authors:  Yuwen Pan; Chao Zhang; Yan Lu; Zhilin Ning; Dongsheng Lu; Yang Gao; Xiaohan Zhao; Yajun Yang; Yaqun Guan; Dolikun Mamatyusupu; Shuhua Xu
Journal:  Natl Sci Rev       Date:  2021-09-11       Impact factor: 17.275

3.  3D facial phenotyping by biometric sibling matching used in contemporary genomic methodologies.

Authors:  Hanne Hoskens; Dongjing Liu; Sahin Naqvi; Myoung Keun Lee; Ryan J Eller; Karlijne Indencleef; Julie D White; Jiarui Li; Maarten H D Larmuseau; Greet Hens; Joanna Wysocka; Susan Walsh; Stephen Richmond; Mark D Shriver; John R Shaffer; Hilde Peeters; Seth M Weinberg; Peter Claes
Journal:  PLoS Genet       Date:  2021-05-13       Impact factor: 5.917

4.  Novel genetic loci affecting facial shape variation in humans.

Authors:  Ziyi Xiong; Gabriela Dankova; Timothy D Spector; Evie Stergiakouli; Seth M Weinberg; Fan Liu; Manfred Kayser; Laurence J Howe; Myoung Keun Lee; Pirro G Hysi; Markus A de Jong; Gu Zhu; Kaustubh Adhikari; Dan Li; Yi Li; Bo Pan; Eleanor Feingold; Mary L Marazita; John R Shaffer; Kerrie McAloney; Shu-Hua Xu; Li Jin; Sijia Wang; Femke Ms de Vrij; Bas Lendemeijer; Stephen Richmond; Alexei Zhurov; Sarah Lewis; Gemma C Sharp; Lavinia Paternoster; Holly Thompson; Rolando Gonzalez-Jose; Maria Catira Bortolini; Samuel Canizales-Quinteros; Carla Gallo; Giovanni Poletti; Gabriel Bedoya; Francisco Rothhammer; André G Uitterlinden; M Arfan Ikram; Eppo Wolvius; Steven A Kushner; Tamar Ec Nijsten; Robert-Jan Ts Palstra; Stefan Boehringer; Sarah E Medland; Kun Tang; Andres Ruiz-Linares; Nicholas G Martin
Journal:  Elife       Date:  2019-11-26       Impact factor: 8.140

5.  A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.

Authors:  Betty Bonfante; Pierre Faux; Nicolas Navarro; Javier Mendoza-Revilla; Morgane Dubied; Charlotte Montillot; Emma Wentworth; Lauriane Poloni; Ceferino Varón-González; Philip Jones; Ziyi Xiong; Macarena Fuentes-Guajardo; Sagnik Palmal; Juan Camilo Chacón-Duque; Malena Hurtado; Valeria Villegas; Vanessa Granja; Claudia Jaramillo; William Arias; Rodrigo Barquera; Paola Everardo-Martínez; Mirsha Sánchez-Quinto; Jorge Gómez-Valdés; Hugo Villamil-Ramírez; Caio C Silva de Cerqueira; Tábita Hünemeier; Virginia Ramallo; Fan Liu; Seth M Weinberg; John R Shaffer; Evie Stergiakouli; Laurence J Howe; Pirro G Hysi; Timothy D Spector; Rolando Gonzalez-José; Lavinia Schüler-Faccini; Maria-Cátira Bortolini; Victor Acuña-Alonzo; Samuel Canizales-Quinteros; Carla Gallo; Giovanni Poletti; Gabriel Bedoya; Francisco Rothhammer; Christel Thauvin-Robinet; Laurence Faivre; Caroline Costedoat; David Balding; Timothy Cox; Manfred Kayser; Laurence Duplomb; Binnaz Yalcin; Justin Cotney; Kaustubh Adhikari; Andrés Ruiz-Linares
Journal:  Sci Adv       Date:  2021-02-05       Impact factor: 14.136

6.  Insights into the genetic architecture of the human face.

Authors:  Julie D White; Karlijne Indencleef; Sahin Naqvi; Ryan J Eller; Hanne Hoskens; Jasmien Roosenboom; Myoung Keun Lee; Jiarui Li; Jaaved Mohammed; Stephen Richmond; Ellen E Quillen; Heather L Norton; Eleanor Feingold; Tomek Swigut; Mary L Marazita; Hilde Peeters; Greet Hens; John R Shaffer; Joanna Wysocka; Susan Walsh; Seth M Weinberg; Mark D Shriver; Peter Claes
Journal:  Nat Genet       Date:  2020-12-07       Impact factor: 38.330

7.  Re-identification of individuals in genomic datasets using public face images.

Authors:  Rajagopal Venkatesaramani; Bradley A Malin; Yevgeniy Vorobeychik
Journal:  Sci Adv       Date:  2021-11-17       Impact factor: 14.136

8.  Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.

Authors:  Chenxing Liu; Myoung Keun Lee; Sahin Naqvi; Hanne Hoskens; Dongjing Liu; Julie D White; Karlijne Indencleef; Harold Matthews; Ryan J Eller; Jiarui Li; Jaaved Mohammed; Tomek Swigut; Stephen Richmond; Mange Manyama; Benedikt Hallgrímsson; Richard A Spritz; Eleanor Feingold; Mary L Marazita; Joanna Wysocka; Susan Walsh; Mark D Shriver; Peter Claes; Seth M Weinberg; John R Shaffer
Journal:  PLoS Genet       Date:  2021-08-19       Impact factor: 5.917

9.  Genetic architecture of orbital telorism.

Authors:  Maria J Knol; Mikolaj A Pawlak; Sander Lamballais; Natalie Terzikhan; Edith Hofer; Ziyi Xiong; Caroline C W Klaver; Lukas Pirpamer; Meike W Vernooij; M Arfan Ikram; Reinhold Schmidt; Manfred Kayser; Tavia E Evans; Hieab H H Adams
Journal:  Hum Mol Genet       Date:  2022-05-04       Impact factor: 5.121

Review 10.  Predicting Physical Appearance from DNA Data-Towards Genomic Solutions.

Authors:  Ewelina Pośpiech; Paweł Teisseyre; Jan Mielniczuk; Wojciech Branicki
Journal:  Genes (Basel)       Date:  2022-01-10       Impact factor: 4.096

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