Literature DB >> 30172385

Harnessing Underground Metabolism for Pathway Development.

Jonathan Rosenberg1, Fabian M Commichau2.   

Abstract

Fermentative production of valuable substances is an economically competitive and ecologically sustainable alternative to chemical synthesis, but it is often hampered by detrimental interactions between the heterologous pathway and the host metabolic network. These interactions are diverse and often not understood. However, the growing knowledge about convergently evolved pathways offers an expansive toolbox to engineer novel, hybrid pathways that could circumvent current problems by recruiting the host 'underground metabolism'. Moreover, considering the debate about genetically modified organisms, harnessing the intrinsic capacity of a cell could be promising for food or feed technologies. This opinion article proposes a ubiquitously applicable and technologically simple approach using metabolic rewiring of reversely engineered hybrid pathways.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Keywords:  adaptive laboratory evolution; convergent evolution; enzyme promiscuity; metabolic engineering; pathway evolution; suppressor mutation

Mesh:

Substances:

Year:  2018        PMID: 30172385     DOI: 10.1016/j.tibtech.2018.08.001

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  7 in total

1.  L-Proline Synthesis Mutants of Bacillus subtilis Overcome Osmotic Sensitivity by Genetically Adapting L-Arginine Metabolism.

Authors:  Daniela Stecker; Tamara Hoffmann; Hannes Link; Fabian M Commichau; Erhard Bremer
Journal:  Front Microbiol       Date:  2022-06-16       Impact factor: 6.064

2.  Carbohydrate Metabolism in Bacteria: Alternative Specificities in ADP-Glucose Pyrophosphorylases Open Novel Metabolic Scenarios and Biotechnological Tools.

Authors:  Jaina Bhayani; Maria Josefina Iglesias; Romina I Minen; Antonela E Cereijo; Miguel A Ballicora; Alberto A Iglesias; Matias D Asencion Diez
Journal:  Front Microbiol       Date:  2022-04-27       Impact factor: 6.064

3.  Towards creating an extended metabolic model (EMM) for E. coli using enzyme promiscuity prediction and metabolomics data.

Authors:  Sara A Amin; Elizabeth Chavez; Vladimir Porokhin; Nikhil U Nair; Soha Hassoun
Journal:  Microb Cell Fact       Date:  2019-06-13       Impact factor: 5.328

4.  A bacterial checkpoint protein for ribosome assembly moonlights as an essential metabolite-proofreading enzyme.

Authors:  Ankita J Sachla; John D Helmann
Journal:  Nat Commun       Date:  2019-04-04       Impact factor: 14.919

Review 5.  Underground metabolism facilitates the evolution of novel pathways for vitamin B6 biosynthesis.

Authors:  Björn Richts; Fabian M Commichau
Journal:  Appl Microbiol Biotechnol       Date:  2021-03-04       Impact factor: 4.813

6.  Underground metabolism as a rich reservoir for pathway engineering.

Authors:  Szabolcs Cselgő Kovács; Balázs Szappanos; Roland Tengölics; Richard A Notebaart; Balázs Papp
Journal:  Bioinformatics       Date:  2022-04-20       Impact factor: 6.931

7.  Expanding biochemical knowledge and illuminating metabolic dark matter with ATLASx.

Authors:  Homa MohammadiPeyhani; Jasmin Hafner; Anastasia Sveshnikova; Victor Viterbo; Vassily Hatzimanikatis
Journal:  Nat Commun       Date:  2022-03-23       Impact factor: 17.694

  7 in total

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