Literature DB >> 30171234

An open-source platform for analyzing and sharing worm-behavior data.

Avelino Javer1,2, Michael Currie3, Chee Wai Lee3, Jim Hokanson3,4, Kezhi Li1,2, Céline N Martineau5, Eviatar Yemini6, Laura J Grundy7, Chris Li8, QueeLim Ch'ng9, William R Schafer7, Ellen A A Nollen5, Rex Kerr10, André E X Brown11,12.   

Abstract

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Year:  2018        PMID： 30171234      PMCID： PMC6284784          DOI： 10.1038/s41592-018-0112-1

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  4 in total

Review 1.  Big behavioral data: psychology, ethology and the foundations of neuroscience.

Authors:  Alex Gomez-Marin; Joseph J Paton; Adam R Kampff; Rui M Costa; Zachary F Mainen
Journal:  Nat Neurosci       Date:  2014-10-28       Impact factor: 24.884

2.  High-throughput behavioral analysis in C. elegans.

Authors:  Nicholas A Swierczek; Andrew C Giles; Catharine H Rankin; Rex A Kerr
Journal:  Nat Methods       Date:  2011-06-05       Impact factor: 28.547

3.  A database of Caenorhabditis elegans behavioral phenotypes.

Authors:  Eviatar Yemini; Tadas Jucikas; Laura J Grundy; André E X Brown; William R Schafer
Journal:  Nat Methods       Date:  2013-07-14       Impact factor: 28.547

4.  The Parallel Worm Tracker: a platform for measuring average speed and drug-induced paralysis in nematodes.

Authors:  Daniel Ramot; Brandon E Johnson; Tommie L Berry; Lucinda Carnell; Miriam B Goodman
Journal:  PLoS One       Date:  2008-05-21       Impact factor: 3.240
  4 in total
  29 in total

1.  Bi-allelic loss-of-function variants in PPFIBP1 cause a neurodevelopmental disorder with microcephaly, epilepsy, and periventricular calcifications.

Authors:  Erik Rosenhahn; Thomas J O'Brien; Maha S Zaki; Ina Sorge; Dagmar Wieczorek; Kevin Rostasy; Antonio Vitobello; Sophie Nambot; Fowzan S Alkuraya; Mais O Hashem; Amal Alhashem; Brahim Tabarki; Abdullah S Alamri; Ayat H Al Safar; Dalal K Bubshait; Nada F Alahmady; Joseph G Gleeson; Mohamed S Abdel-Hamid; Nicole Lesko; Sofia Ygberg; Sandrina P Correia; Anna Wredenberg; Shahryar Alavi; Seyed M Seyedhassani; Mahya Ebrahimi Nasab; Haytham Hussien; Tarek E I Omar; Ines Harzallah; Renaud Touraine; Homa Tajsharghi; Heba Morsy; Henry Houlden; Mohammad Shahrooei; Maryam Ghavideldarestani; Ghada M H Abdel-Salam; Annalaura Torella; Mariateresa Zanobio; Gaetano Terrone; Nicola Brunetti-Pierri; Abdolmajid Omrani; Julia Hentschel; Johannes R Lemke; Heinrich Sticht; Rami Abou Jamra; Andre E X Brown; Reza Maroofian; Konrad Platzer
Journal:  Am J Hum Genet       Date:  2022-07-12       Impact factor: 11.043

2.  Comprehensive analysis of locomotion dynamics in the protochordate Ciona intestinalis reveals how neuromodulators flexibly shape its behavioral repertoire.

Authors:  Athira Athira; Daniel Dondorp; Jerneja Rudolf; Olivia Peytral; Marios Chatzigeorgiou
Journal:  PLoS Biol       Date:  2022-08-04       Impact factor: 9.593

3.  Association of Two Opposing Responses Results in the Emergence of a Novel Conditioned Response.

Authors:  Micaela R Pribic; Aristide H Black; Asia D Beale; Jessica A Gauvin; Lisa N Chiang; Jacqueline K Rose
Journal:  Front Behav Neurosci       Date:  2022-04-29       Impact factor: 3.617

4.  Omnipose: a high-precision morphology-independent solution for bacterial cell segmentation.

Authors:  Kevin J Cutler; Carsen Stringer; Teresa W Lo; Luca Rappez; Nicholas Stroustrup; S Brook Peterson; Paul A Wiggins; Joseph D Mougous
Journal:  Nat Methods       Date:  2022-10-17       Impact factor: 47.990

5.  Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation.

Authors:  Troy A McDiarmid; Manuel Belmadani; Joseph Liang; Fabian Meili; Eleanor A Mathews; Gregory P Mullen; Ardalan Hendi; Wan-Rong Wong; James B Rand; Kota Mizumoto; Kurt Haas; Paul Pavlidis; Catharine H Rankin
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-21       Impact factor: 11.205

6.  A terminal selector prevents a Hox transcriptional switch to safeguard motor neuron identity throughout life.

Authors:  Weidong Feng; Yinan Li; Pauline Dao; Jihad Aburas; Priota Islam; Benayahu Elbaz; Anna Kolarzyk; André Ex Brown; Paschalis Kratsios
Journal:  Elife       Date:  2020-01-03       Impact factor: 8.140

7.  Comparative Analysis of Experimental Methods to Quantify Animal Activity in Caenorhabditis elegans Models of Mitochondrial Disease.

Authors:  Manuela Lavorato; Neal D Mathew; Nina Shah; Eiko Nakamaru-Ogiso; Marni J Falk
Journal:  J Vis Exp       Date:  2021-04-04       Impact factor: 1.355

8.  Tracking changes in behavioural dynamics using prediction error.

Authors:  Tom Lorimer; Rachel Goodridge; Antonia K Bock; Vitul Agarwal; Erik Saberski; George Sugihara; Scott A Rifkin
Journal:  PLoS One       Date:  2021-05-12       Impact factor: 3.240

9.  Behavioral fingerprints predict insecticide and anthelmintic mode of action.

Authors:  Adam McDermott-Rouse; Eleni Minga; Ida Barlow; Luigi Feriani; Philippa H Harlow; Anthony J Flemming; André E X Brown
Journal:  Mol Syst Biol       Date:  2021-05       Impact factor: 11.429

10.  Inhibition Underlies Fast Undulatory Locomotion in Caenorhabditis elegans.

Authors:  Lan Deng; Jack E Denham; Charu Arya; Omer Yuval; Netta Cohen; Gal Haspel
Journal:  eNeuro       Date:  2021-03-10
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