Literature DB >> 30166461

Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water".

Gustavo Fuertes1,2,3, Niccolo Banterle1, Kiersten M Ruff4, Aritra Chowdhury1, Rohit V Pappu5, Dmitri I Svergun6, Edward A Lemke7,8,9.   

Abstract

Editors at Science requested our input on the above discussion (comment by Best et al and response by Riback et al) because both sets of authors use our data from Fuertes et al (2017) to support their arguments. The topic of discussion pertains to the discrepant inferences drawn from SAXS versus FRET measurements regarding the dimensions of intrinsically disordered proteins (IDPs) in aqueous solvents. Using SAXS measurements on labeled and unlabeled proteins, we ruled out the labels used for FRET measurements as the cause of discrepant inferences between the two methods. Instead, we propose that FRET and SAXS provide complementary readouts because of a decoupling of size and shape fluctuations that is intrinsic to finite-sized, heteropolymeric IDPs. Accounting for this decoupling resolves the discrepant inferences between the two methods, thus making a case for the utility of both methods.
Copyright © 2018, American Association for the Advancement of Science.

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Year:  2018        PMID: 30166461     DOI: 10.1126/science.aau8230

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  14 in total

1.  The combined force field-sampling problem in simulations of disordered amyloid-β peptides.

Authors:  James Lincoff; Sukanya Sasmal; Teresa Head-Gordon
Journal:  J Chem Phys       Date:  2019-03-14       Impact factor: 3.488

2.  Commonly used FRET fluorophores promote collapse of an otherwise disordered protein.

Authors:  Joshua A Riback; Micayla A Bowman; Adam M Zmyslowski; Kevin W Plaxco; Patricia L Clark; Tobin R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-16       Impact factor: 11.205

3.  Binding Affinity and Function of the Extremely Disordered Protein Complex Containing Human Linker Histone H1.0 and Its Chaperone ProTα.

Authors:  Hanqiao Feng; Bing-Rui Zhou; Yawen Bai
Journal:  Biochemistry       Date:  2018-11-19       Impact factor: 3.162

Review 4.  Emerging consensus on the collapse of unfolded and intrinsically disordered proteins in water.

Authors:  Robert B Best
Journal:  Curr Opin Struct Biol       Date:  2019-12-02       Impact factor: 6.809

5.  Sequence Effects on Size, Shape, and Structural Heterogeneity in Intrinsically Disordered Proteins.

Authors:  Upayan Baul; Debayan Chakraborty; Mauro L Mugnai; John E Straub; D Thirumalai
Journal:  J Phys Chem B       Date:  2019-04-15       Impact factor: 2.991

6.  Origin of Internal Friction in Disordered Proteins Depends on Solvent Quality.

Authors:  Wenwei Zheng; Hagen Hofmann; Benjamin Schuler; Robert B Best
Journal:  J Phys Chem B       Date:  2018-10-02       Impact factor: 2.991

7.  Protein structural changes characterized by high-pressure, pulsed field gradient diffusion NMR spectroscopy.

Authors:  Venkatraman Ramanujam; T Reid Alderson; Iva Pritišanac; Jinfa Ying; Ad Bax
Journal:  J Magn Reson       Date:  2020-02-19       Impact factor: 2.229

8.  Small-angle X-ray scattering experiments of monodisperse intrinsically disordered protein samples close to the solubility limit.

Authors:  Erik W Martin; Jesse B Hopkins; Tanja Mittag
Journal:  Methods Enzymol       Date:  2020-08-04       Impact factor: 1.600

9.  Denatured State Conformational Biases in Three-Helix Bundles Containing Divergent Sequences Localize near Turns and Helix Capping Residues.

Authors:  Moses J Leavens; Lisa E Spang; Melisa M Cherney; Bruce E Bowler
Journal:  Biochemistry       Date:  2021-10-04       Impact factor: 3.321

10.  Probing Interdomain Linkers and Protein Supertertiary Structure In Vitro and in Live Cells with Fluorescent Protein Resonance Energy Transfer.

Authors:  Sujit Basak; Nabanita Sakia; Laura Dougherty; Zhuojun Guo; Fang Wu; Frank Mindlin; Jeffrey W Lary; James L Cole; Feng Ding; Mark E Bowen
Journal:  J Mol Biol       Date:  2021-01-01       Impact factor: 5.469

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