Literature DB >> 3016414

A simple way to look at DNA.

M A Gates.   

Abstract

A method is presented for embedding nucleotide sequence data in a simple metric space. Computer graphical examination of spatially-represented sequences permits rapid searches for canonical patterns or interesting structures. Sequence comparisons are facilitated by plots of distance measures for homologous sequences, and the large-scale structure of the genetic code can be studied by measures such as fractal dimensionality.

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Year:  1986        PMID: 3016414     DOI: 10.1016/s0022-5193(86)80144-8

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  25 in total

Review 1.  Identification of replication origins in archaeal genomes based on the Z-curve method.

Authors:  Ren Zhang; Chun-Ting Zhang
Journal:  Archaea       Date:  2005-05       Impact factor: 3.273

2.  DNA sequence representation without degeneracy.

Authors:  Stephen S-T Yau; Jiasong Wang; Amir Niknejad; Chaoxiao Lu; Ning Jin; Yee-Kin Ho
Journal:  Nucleic Acids Res       Date:  2003-06-15       Impact factor: 16.971

3.  Quantification of DNA patchiness using long-range correlation measures.

Authors:  G M Viswanathan; S V Buldyrev; S Havlin; H E Stanley
Journal:  Biophys J       Date:  1997-02       Impact factor: 4.033

4.  Conserved Critical Evolutionary Gene Structures in Orthologs.

Authors:  Miguel A Fuertes; José R Rodrigo; Carlos Alonso
Journal:  J Mol Evol       Date:  2019-02-28       Impact factor: 2.395

5.  Wavelet Analysis of DNA Bending Profiles reveals Structural Constraints on the Evolution of Genomic Sequences.

Authors:  Benjamin Audit; Cédric Vaillant; Alain Arnéodo; Yves d'Aubenton-Carafa; Claude Thermes
Journal:  J Biol Phys       Date:  2004-03       Impact factor: 1.365

6.  Study of peptide fingerprints of parasite proteins and drug-DNA interactions with Markov-Mean-Energy invariants of biopolymer molecular-dynamic lattice networks.

Authors:  Lázaro Guillermo Pérez-Montoto; María Auxiliadora Dea-Ayuela; Francisco J Prado-Prado; Francisco Bolas-Fernández; Florencio M Ubeira; Humberto González-Díaz
Journal:  Polymer (Guildf)       Date:  2009-06-03       Impact factor: 4.430

7.  Computational analysis and determination of a highly conserved surface exposed segment in H5N1 avian flu and H1N1 swine flu neuraminidase.

Authors:  Ambarnil Ghosh; Ashesh Nandy; Papiya Nandy
Journal:  BMC Struct Biol       Date:  2010-02-22

8.  On the existence of wavelet symmetries in archaea DNA.

Authors:  Carlo Cattani
Journal:  Comput Math Methods Med       Date:  2011-11-28       Impact factor: 2.238

9.  Empirical relationship between intra-purine and intra-pyrimidine differences in conserved gene sequences.

Authors:  Ashesh Nandy
Journal:  PLoS One       Date:  2009-08-28       Impact factor: 3.240

10.  FEGS: a novel feature extraction model for protein sequences and its applications.

Authors:  Zengchao Mu; Ting Yu; Xiaoping Liu; Hongyu Zheng; Leyi Wei; Juntao Liu
Journal:  BMC Bioinformatics       Date:  2021-06-03       Impact factor: 3.169

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