Literature DB >> 30154247

The insulin-like growth factor 2 gene and locus in nonmammalian vertebrates: Organizational simplicity with duplication but limited divergence in fish.

Peter Rotwein1.   

Abstract

The small, secreted peptide, insulin-like growth factor 2 (IGF2), is essential for fetal and prenatal growth in humans and other mammals. Human IGF2 and mouse Igf2 genes are located within a conserved linkage group and are regulated by parental imprinting, with IGF2/Igf2 being expressed from the paternally derived chromosome, and H19 from the maternal chromosome. Here, data retrieved from genomic and gene expression repositories were used to examine the Igf2 gene and locus in 8 terrestrial vertebrates, 11 ray-finned fish, and 1 lobe-finned fish representing >500 million years of evolutionary diversification. The analysis revealed that vertebrate Igf2 genes are simpler than their mammalian counterparts, having fewer exons and lacking multiple gene promoters. Igf2 genes are conserved among these species, especially in protein-coding regions, and IGF2 proteins also are conserved, although less so in fish than in terrestrial vertebrates. The Igf2 locus in terrestrial vertebrates shares additional genes with its mammalian counterparts, including tyrosine hydroxylase (Th), insulin (Ins), mitochondrial ribosomal protein L23 (Mrpl23), and troponin T3, fast skeletal type (Tnnt3), and both Th and Mrpl23 are present in the Igf2 locus in fish. Taken together, these observations support the idea that a recognizable Igf2 was present in the earliest vertebrate ancestors, but that other features developed and diversified in the gene and locus with speciation, especially in mammals. This study also highlights the need for correcting inaccuracies in genome databases to maximize our ability to accurately assess contributions of individual genes and multigene families toward evolution, physiology, and disease.
© 2018 Rotwein.

Entities:  

Keywords:  gene annotation; gene evolution; gene expression; gene phylogeny; gene structure; genetic database; genetics; genomics; insulin-like growth factor (IGF); phylogenetics; vertebrate speciation

Mesh:

Substances:

Year:  2018        PMID: 30154247      PMCID: PMC6187628          DOI: 10.1074/jbc.RA118.004861

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  80 in total

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5.  Conservation of the H19 noncoding RNA and H19-IGF2 imprinting mechanism in therians.

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Journal:  Comp Biochem Physiol A Mol Integr Physiol       Date:  2005-05       Impact factor: 2.320

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Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

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Authors:  N Giannoukakis; C Deal; J Paquette; C G Goodyer; C Polychronakos
Journal:  Nat Genet       Date:  1993-05       Impact factor: 38.330

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6.  The insulin-like growth factor 2 gene in mammals: Organizational complexity within a conserved locus.

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