Literature DB >> 30151896

Redefining synchronous colorectal cancers based on tumor clonality.

José Perea1,2, Juan L García3,4, Luis Corchete3,4, Eva Lumbreras3,4, María Arriba5, Daniel Rueda6,7, Sandra Tapial6, Jessica Pérez3,4, Victoria Vieiro8, Yolanda Rodríguez9, Lorena Brandáriz1,2, Mariano García-Arranz2, Damián García-Olmo1,2, Ajay Goel10, Miguel Urioste11,12, Rogelio González Sarmiento3,4.   

Abstract

To analyze the possible clonal origin of a part of Synchronous colorectal cancer (SCRC), we studied 104 paired-SCRCs from 52 consecutive patients without hereditary forms of CRC. We used a Single-Nucleotide Polymorphism array to characterize the genomic profiles, and subsequently used a statistical application to define them according to clonality within the same individual. We categorized the ensuing groups according to colonic location to identify differential phenotypes. The SCRC Monoclonal group (M) (19 cases) was divided into Monosegmental (MM) and Pancolonic (MP) groups. The SCRC Polyclonal group (P) (33 cases) was also divided into Monosegmental (PM) and Pancolonic (PP), the first exhibiting preference for left colon. The MM group showed a high rate of mucinous tumors, the lowest mean-number of tumors and associated-polyps, and the worst prognosis. The MP group included the largest mean-number of associated-polyps, best prognosis and familial cancer component. The PM group seemed to be a "frontier" group. Finally, the PP group also exhibited a mucin component, the highest mean-number of tumors (4.6) compared with the mean-number of polyps (7.7), poor prognosis and sporadic cases. Most relevant differential genomic regions within M groups were gains on 1q24 and 8q24, and deletions on 1p21 and 1p23 for MM, while within P were the gains on 7q36 and deletions on 1p36 for PM. The statistical application employed seems to define clonality more accurately in SCRC -more likely to be polyclonal in origin-, and together with the tumor locations, helped us to configure a classification with prognostic and clinical value.
© 2018 UICC.

Entities:  

Keywords:  Single-Nucleotide Polymorphism array (SNP array); Synchronous colorectal cancer; clonality; colon location; monoclonal; polyclonal

Mesh:

Year:  2018        PMID: 30151896      PMCID: PMC6361712          DOI: 10.1002/ijc.31761

Source DB:  PubMed          Journal:  Int J Cancer        ISSN: 0020-7136            Impact factor:   7.396


  40 in total

1.  A metastasis or a second independent cancer? Evaluating the clonal origin of tumors using array copy number data.

Authors:  Irina Ostrovnaya; Adam B Olshen; Venkatraman E Seshan; Irene Orlow; Donna G Albertson; Colin B Begg
Journal:  Stat Med       Date:  2010-07-10       Impact factor: 2.373

2.  Microsatellite instability in multiple colorectal tumors.

Authors:  M Pedroni; M G Tamassia; A Percesepe; L Roncucci; P Benatti; G Lanza; R Gafà; C Di Gregorio; R Fante; L Losi; L Gallinari; F Scorcioni; F Vaccina; G Rossi; A M Cesinaro; M Ponz de Leon
Journal:  Int J Cancer       Date:  1999-03-31       Impact factor: 7.396

3.  Clonality: an R package for testing clonal relatedness of two tumors from the same patient based on their genomic profiles.

Authors:  Irina Ostrovnaya; Venkatraman E Seshan; Adam B Olshen; Colin B Begg
Journal:  Bioinformatics       Date:  2011-05-05       Impact factor: 6.937

4.  Hypomethylation of L1 retrotransposons in colorectal cancer and adjacent normal tissue.

Authors:  Catherine M Suter; David I Martin; Robyn L Ward
Journal:  Int J Colorectal Dis       Date:  2003-10-08       Impact factor: 2.571

5.  Whole exome sequencing reveals intertumor heterogeneity and distinct genetic origins of sporadic synchronous colorectal cancer.

Authors:  Jiabo Di; Hong Yang; Beihai Jiang; Zaozao Wang; Jiafu Ji; Xiangqian Su
Journal:  Int J Cancer       Date:  2017-11-27       Impact factor: 7.396

6.  Genome-wide association study and meta-analysis in Northern European populations replicate multiple colorectal cancer risk loci.

Authors:  Tomas Tanskanen; Linda van den Berg; Niko Välimäki; Mervi Aavikko; Eivind Ness-Jensen; Kristian Hveem; Yvonne Wettergren; Elinor Bexe Lindskog; Neeme Tõnisson; Andres Metspalu; Kaisa Silander; Giulia Orlando; Philip J Law; Sari Tuupanen; Alexandra E Gylfe; Ulrika A Hänninen; Tatiana Cajuso; Johanna Kondelin; Antti-Pekka Sarin; Eero Pukkala; Pekka Jousilahti; Veikko Salomaa; Samuli Ripatti; Aarno Palotie; Heikki Järvinen; Laura Renkonen-Sinisalo; Anna Lepistö; Jan Böhm; Jukka-Pekka Mecklin; Nada A Al-Tassan; Claire Palles; Lynn Martin; Ella Barclay; Albert Tenesa; Susan M Farrington; Maria N Timofeeva; Brian F Meyer; Salma M Wakil; Harry Campbell; Christopher G Smith; Shelley Idziaszczyk; Tim S Maughan; Richard Kaplan; Rachel Kerr; David Kerr; Daniel D Buchanan; Aung K Win; John Hopper; Mark A Jenkins; Polly A Newcomb; Steve Gallinger; David Conti; Fredrick R Schumacher; Graham Casey; Jeremy P Cheadle; Malcolm G Dunlop; Ian P Tomlinson; Richard S Houlston; Kimmo Palin; Lauri A Aaltonen
Journal:  Int J Cancer       Date:  2017-10-12       Impact factor: 7.396

7.  GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers.

Authors:  Craig H Mermel; Steven E Schumacher; Barbara Hill; Matthew L Meyerson; Rameen Beroukhim; Gad Getz
Journal:  Genome Biol       Date:  2011-04-28       Impact factor: 13.583

8.  Comparative genomic analysis reveals bilateral breast cancers are genetically independent.

Authors:  Fangfang Song; Xiangchun Li; Fengju Song; Yanrui Zhao; Haixin Li; Hong Zheng; Zhibo Gao; Jun Wang; Wei Zhang; Kexin Chen
Journal:  Oncotarget       Date:  2015-10-13

9.  Copynumber: Efficient algorithms for single- and multi-track copy number segmentation.

Authors:  Gro Nilsen; Knut Liestøl; Peter Van Loo; Hans Kristian Moen Vollan; Marianne B Eide; Oscar M Rueda; Suet-Feung Chin; Roslin Russell; Lars O Baumbusch; Carlos Caldas; Anne-Lise Børresen-Dale; Ole Christian Lingjaerde
Journal:  BMC Genomics       Date:  2012-11-04       Impact factor: 3.969

10.  Comprehensive genomic sequencing detects important genetic differences between right-sided and left-sided colorectal cancer.

Authors:  Yoshifumi Shimada; Hitoshi Kameyama; Masayuki Nagahashi; Hiroshi Ichikawa; Yusuke Muneoka; Ryoma Yagi; Yosuke Tajima; Takuma Okamura; Masato Nakano; Jun Sakata; Takashi Kobayashi; Hitoshi Nogami; Satoshi Maruyama; Yasumasa Takii; Tetsu Hayashida; Hiromasa Takaishi; Yuko Kitagawa; Eiji Oki; Tsuyoshi Konishi; Fumio Ishida; Shin-Ei Kudo; Jennifer E Ring; Alexei Protopopov; Stephen Lyle; Yiwei Ling; Shujiro Okuda; Takashi Ishikawa; Kohei Akazawa; Kazuaki Takabe; Toshifumi Wakai
Journal:  Oncotarget       Date:  2017-08-24
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  5 in total

1.  Exome and immune cell score analyses reveal great variation within synchronous primary colorectal cancers.

Authors:  Ulrika A Hänninen; Erkki-Ville Wirta; Riku Katainen; Tomas Tanskanen; Jiri Hamberg; Minna Taipale; Jan Böhm; Laura Renkonen-Sinisalo; Anna Lepistö; Linda M Forsström; Esa Pitkänen; Kimmo Palin; Toni T Seppälä; Netta Mäkinen; Jukka-Pekka Mecklin; Lauri A Aaltonen
Journal:  Br J Cancer       Date:  2019-03-21       Impact factor: 7.640

2.  Cimp-Positive Status is More Representative in Multiple Colorectal Cancers than in Unique Primary Colorectal Cancers.

Authors:  Sandra Tapial; Susana Olmedillas-López; Daniel Rueda; María Arriba; Juan L García; Alfredo Vivas; Jessica Pérez; Laura Pena-Couso; Rocío Olivera; Yolanda Rodríguez; Mariano García-Arranz; Damián García-Olmo; Rogelio González-Sarmiento; Miguel Urioste; Ajay Goel; José Perea
Journal:  Sci Rep       Date:  2019-07-19       Impact factor: 4.379

3.  An EM algorithm to improve the estimation of the probability of clonal relatedness of pairs of tumors in cancer patients.

Authors:  Audrey Mauguen; Venkatraman E Seshan; Irina Ostrovnaya; Colin B Begg
Journal:  BMC Bioinformatics       Date:  2019-11-08       Impact factor: 3.169

4.  A clinico-pathological and molecular analysis reveals differences between solitary (early and late-onset) and synchronous rectal cancer.

Authors:  José Perea; Juan L García; Luis Corchete; Sandra Tapial; Susana Olmedillas-López; Alfredo Vivas; Damián García-Olmo; Miguel Urioste; Ajay Goel; Rogelio González-Sarmiento
Journal:  Sci Rep       Date:  2021-01-26       Impact factor: 4.379

5.  Commentary: Genomic Analysis Reveals Heterogeneity Between Lesions in Synchronous Primary Right-Sided and Left-Sided Colon Cancer.

Authors:  José Perea; Luis Corchete; Juan L García; Miguel Urioste; Rogelio González-Sarmiento
Journal:  Front Mol Biosci       Date:  2022-01-21
  5 in total

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