| Literature DB >> 30151094 |
Fabien Buissart1,2, Michel Vennetier1,3, Sylvain Delagrange4, François Girard5, Yves Caraglio6, Sylvie-Annabel Sabatier6, Alison D Munson7, Eric-André Nicolini6.
Abstract
Knowledge of plant architecture allows retrospective study of plant development, hence provides powerful tools, through modelling and simulation, to link this development with environmental constraints, and then predict its response to global change. The present study aims to determine some of the main endogenous and exogenous variables driving the architectural development of three North American conifers. We measured architectural traits retrospectively on the trunk, branches and twigs of whole tree crowns for each species: annual shoot length (ASL), needle length, branching patterns and reproduction organs (male and female). We fitted a partial least square (PLS) regression to explain each architectural trait with respect to topological, ontogenic and climatic variables. Results showed a significant weight of these three groups of variables for previous and current year, corresponding, respectively, to organogenesis and elongation. Topological and ontogenic variables had the greatest weight in models. Particularly, all architectural traits were strongly correlated with ASL. We highlighted a negative architectural response of two species to higher than average temperatures, whereas the third one took advantage of these higher temperatures to some degree. Tree architectural development weekly but significantly improved with higher precipitation. Our study underlines the strong weight of topology and ontogeny in tree growth patterns at twig and branch scales. The correlation between ASL and other tree architectural traits should be integrated into architectural development models. Climate variables are secondary in importance at the twig scale. However, interannual climate variations influence all axis categories and branching orders and therefore significantly impact crown development as a whole. This latter impact may increase with climate change, especially as climate affects architectural traits over at least 2 years, through organogenesis and elongation.Entities:
Keywords: Canada; PLS regression; Picea mariana; Pinus banksiana; Pinus strobus; Québec; climate; ontogeny; topology; tree architecture
Year: 2018 PMID: 30151094 PMCID: PMC6101484 DOI: 10.1093/aobpla/ply045
Source DB: PubMed Journal: AoB Plants Impact factor: 3.276
Figure 1.Map locating study sites and the range of studied species within the study area.
Dependent architectural variables. *The number of branches per annual shoot or growth unit is thereafter named branching rate.
| Variable | All variables refer to a single annual shoot or growth unit |
|---|---|
| ASL | Annual shoot length |
| NL | Mean needle length |
| N ram* | Number of branches (ramifications) for pine species |
| whorl ram* | Number of branches of the pseudowhorl for black spruce |
| int ram* | Number of interwhorl branches for black spruce |
| Polyc | Polycyclism rate for pines |
| Lg ♂ | Length of male cones ( |
| P ♂ | Presence/absence of male cones (binary) |
| N ♂ | Number of male cones, for the black spruce |
| N ♀ | Number of female cones |
Independent explanatory variables: topological variables. **Vigour index (ranging from 0 to 1 from the weakest to the strongest) is the probability of the value of the axis growth pattern for the age of the annual shoot in the normal distribution of shoot length values for this age within its hierarchical order.
| Variable | Description |
|---|---|
| Order | Three values: 1 = trunk, 2 = main axis of sampled branches, 3 = first level branching (twigs) of branch main axis |
| Vigour** | Relative vigour index of the axis: computed for each axis from its shoot length growth pattern |
Independent explanatory variables: ontogenic variables.
| Variable | Description |
|---|---|
| Age | Ontogenic age = rank of an annual shoot relative to the first annual shoot at the base of the axis ( |
| Tree age | Age of the tree at the year of a given annual shoot development |
| Autocorrelation | Value of the previous year ( |
Descriptive statistics of studied architectural variables by species, axis hierarchical order and ontogenic age: mean, SD, range and percentage of occurrence. In Age column, the number in brackets is the number of observations. In the columns for ASL, needle length (NL), number of male cones for black spruce (N ♂), length of male cones on annual shoot for pines (Lg ♂), number of female cones (N ♀), number of branches in the pseudowhorl for black spruce and in the whorl for pines (whorl ram) and number of interwhorl branches for black spruce (int ram), the first row of each cell corresponds to the mean, the second row (in italic) to the SD, the third row, between square brackets, to the range of the variable (if SD > 0). For N ♂ and Lg ♂ for pines, a fourth row gives the percentage of twigs bearing male cones. Polycyclism column (polyc) reports for each number of cycles (1–3) the percentage of concerned axes.
| Species | Order | Age | ASL | NL | N ♂ | N ♀ | whorl ram | int ram | Polyc |
|---|---|---|---|---|---|---|---|---|---|
| Black spruce | 1 | <45 | 210.4 | 7.86 | 0 | 0 | 6.57 | 16.29 | 1:100 % |
| >45 | 127.1 | 5.77 | 0 | 0.17 | 4.54 | 9.42 | 1:100 % | ||
| 2 | <35 | 39.62 | 7.89 | 0.08 | 0.05 | 3.48 | 1.31 | 1:100 % | |
| >35 | 31.64 | 8.4 | 0.03 | 0 | 2.88 | 0.72 | 1:100 % | ||
| 3 | <10 | 25.92 | 7.76 | 0.31 | 0.05 | 1.94 | 0.18 | 1:100 % | |
| >10 | 25.4 | 7.92 | 0.06 | 0 | 1.61 | 0.25 | 1:100 % | ||
| Species | Order | Age | ASL | NL | L ♂ | N ♀ | whorl ram | int ram | Polyc |
| Jack pine | 1 | [62–75] | 114.3 | 28.92 | 0 | 3.69 | 7.46 | NA | 1:0 % |
| 2 | <40 | 54.61 | 27.21 | 0.28 | 1.18 | 2.82 | NA | 1:35.5 % | |
| >40 | 30.57 | 23.24 | 1.64 | 0.56 | 1.42 | NA | 1:60.8 % | ||
| 3 | <20 | 22.49 | 23.93 | 1.05 | 0.14 | 0.65 | NA | 1:90.6 % | |
| >20 | 19.26 | 22.3 | 1.03 | 0.16 | 0.74 | NA | 1:87.11 % | ||
| Species | Order | Age | ASL | NL | L ♂ | N ♀ | whorl ram | int ram | Polyc |
| Eastern white pine | 2 | <30 | 109.9 | 79.03 | 0.72 | 0.05 | 2 | NA | 1:98.1 % |
| >30 | 80.57 | 76.12 | 0.92 | 0.01 | 1.44 | NA | 1:100 % | ||
| 3 | <20 | 38.21 | 74.47 | 0.69 | 0.01 | 0.59 | NA | 1:99.9 % | |
| >20 | 23.6 | 71.18 | 1.34 | 0 | 0.27 | NA | 1:100 % | ||
Figure 3.Dependant topological and ontogenic variables for all models, for black spruce (A), Eastern white pine (B) and Jack pine (C) vs. independent explanatory variables. Positive correlation appears in greyscale, whereas negative correlation appears with dots and hatchings. A star for Q2 and R2 indicates a logistic regression model, hence R2 and Q2 correspond to McFadden pseudo-R2 calculation method (McFadden 1973).
Figure 4.Climatic variables for each model, for black spruce (A), Eastern white pine (B) and Jack pine (C). Positive coefficients appear in grey scale, whereas negative ones appear with dots and hatchings. T stands for temperature, R for précipitation, Wint for winter (January–March), Sprg for spring (April–June), Sumr for summer (July–September) and Fall for October–December. The last columns on the right give the Q2 and r2 for each model.
Figure 2.
Partial correlation coefficients of variables in ASL PLS models. Letters (A), (B) and (C) plot for black spruce, Eastern white pine and Jack pine, respectively. Ontogenic variables appear in white, topologic variables in dark grey, local fixed effects in hatching and climatic variables in dashed lines. Variables are sorted by descending VIP from left to right. R2 are 0.633, 0.795 and 0.742 for black spruce, Eastern white pine and Jack pine, respectively; Q2 are 0.626, 0.794 and 0.736 in the same order. Local fixed effect may be related to: (i) site effect (GJ and site number for Grands Jardins, RP and site number for Réserve Papineau); (ii) tree effect (the site name, a dot and EN and tree number for black spruce, PB and tree number for Eastern white pine, PG and tree number for Jack pine) or (iii) branch effect (the tree name, a dot and a combination of two letters indicating the position within the crown, H-M-B for high, medium, low, the orientation = cardinal point N-E-S-W potentially combined by two, and the branch number). Climatic variables may correspond to organogenesis year (previous year, variable name ending by Prev) or elongating year (current year ending by Curr), and may be rainfall (begin with R.), absolute minimum temperature (begin with TNn.), mean minimum temperature (TN.), mean temperature (TM.), mean maximum temperature (TX.), absolute maximum temperature (TXx.) or degree-day (DD.). R, TNn, TN, TM, TX and TXx are calculated on a period of the year, indicated by the middle part of variable name, Wint for January–March, Sprg for April–June, Sumr for July–September, Aut for October–December, or a number corresponding to the month. Degree-days are calculated over the year, but with a basis corresponding to the number appearing in the middle of variable name.
Figure 5.Relationship between log(ASL) or ASL and age, and related quantile–quantile plots, for order 2 and 3 branches of black spruce, Eastern white pine and Jack pine. For log(ASL), the line plots the linear model. On ASL distribution, the solid line plots the probability 0.5, the two dashed lines the probability 0.25 and 0.75, the two dotted lines the probability 0.05 and 0.95.