Literature DB >> 30146880

Dynamical Regulation of Enzyme Cascade Amplification by a Regenerated DNA Nanotweezer for Ultrasensitive Electrochemical DNA Detection.

Beibei Kou1, Yaqin Chai1, Yali Yuan1, Ruo Yuan1.   

Abstract

Traditional scaffolds such as metal nanoparticles and DNA origami remain a considerable challenge to regulate the enzyme cascade catalytic efficiency dynamically and reversibly on account of their irreversible conformation. To address these issues, a regenerated DNA tweezer was designed to dynamically regulate the interenzyme spacing for high-efficiency enzyme cascade amplification for homogeneous determination of target DNA related to cancer diseases. Initially, the enzyme-functionalized DNA tweezer was maintained at the opened state with a relatively distant interenzyme distance (19-24 nm), leading to a low catalytic efficiency. Benefiting from target induced Mg2+-dependent DNAzyme cleavage recycling, the one input target could be transduced to multiple corresponding methylene blue (MB) labeled DNA (S5), which served not only as the signal probe to provide a detectable electrochemical signal but also fuel to switch the DNA tweezer from the opened to closed state, leading to cascaded enzymes close enough (5-10 nm) for enhancing the catalytic efficiency for sensitive target DNA analysis with a low detection limit down to 30 fM. In the presence of antifuels, the closed DNA tweezer easily switched back to the opened state via a one-step strand displacement, and the obtained DNA tweezer achieved regeneration for subsequently recycling target detection. With the dynamical regulation of interenzyme distance in an "open-close-open" way, the enzyme cascade catalytic efficiency became dynamically controllable, and the DNA tweezer realized simple reutilization over five times, overcoming the drawbacks of inflexible, time-consuming operation and false positive signal induced by traditional scaffolds. More importantly, this method opened a new avenue for employing the arbitrary change of enzyme cascade catalytic efficiency for sensitive detection various biomolecules.

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Year:  2018        PMID: 30146880     DOI: 10.1021/acs.analchem.8b00477

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  5 in total

1.  Switchable DNA tweezer and G-quadruplex nanostructures for ultrasensitive voltammetric determination of the K-ras gene fragment.

Authors:  Haohan Chen; Xiaofan Sun; Rongfeng Cai; Yaping Tian; Nandi Zhou
Journal:  Mikrochim Acta       Date:  2019-11-25       Impact factor: 5.833

2.  A dual signal amplification strategy combining thermally initiated SI-RAFT polymerization and DNA-templated silver nanoparticles for electrochemical determination of DNA.

Authors:  Bang Liu; Haobo Sun; Lianzhi Li; Jian Zhang; Jinming Kong; Xueji Zhang
Journal:  Mikrochim Acta       Date:  2019-12-09       Impact factor: 5.833

Review 3.  Dynamic DNA Assemblies in Biomedical Applications.

Authors:  Yaqin Hu; Ying Wang; Jianhua Yan; Nachuan Wen; Hongjie Xiong; Shundong Cai; Qunye He; Dongming Peng; Zhenbao Liu; Yanfei Liu
Journal:  Adv Sci (Weinh)       Date:  2020-06-08       Impact factor: 16.806

4.  Three-dimensional DNA tweezers serve as modular DNA intelligent machines for detection and regulation of intracellular microRNA.

Authors:  Lin Zhou; Mingxuan Gao; Weiling Fu; Yunxia Wang; Dan Luo; Kai Chang; Ming Chen
Journal:  Sci Adv       Date:  2020-05-29       Impact factor: 14.136

Review 5.  DNA-Scaffolded Proximity Assembly and Confinement of Multienzyme Reactions.

Authors:  Jinglin Fu; Zhicheng Wang; Xiao Hua Liang; Sung Won Oh; Ezry St Iago-McRae; Ting Zhang
Journal:  Top Curr Chem (Cham)       Date:  2020-04-04
  5 in total

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