Literature DB >> 30143861

Phylogenetic analysis and forensic evaluation among Rakhine, Marma, Hajong, and Manipuri tribes from four culturally defined regions of Bangladesh using 17 Y-chromosomal STRs.

Mahamud Hasan1, Abu Sufian1, Pilu Momtaz1, Ashish Kumar Mazumder1, Jabedul Alam Khondaker1, Saikat Bhattacharjee2, Kanchan Chakma2, Sharif Akhteruzzaman3.   

Abstract

We have analyzed haplotypes for 17 Y chromosomal STR loci in Bangladeshi mainstream Bengali population and four largest ethnic groups inhabiting the North-Eastern and Southern region of Bangladesh using AmpFlSTR® Yfiler® PCR amplification systems. A total of 667 haplotypes from Bangladeshi Bangali, 157 from Rakhine, 144 from Marma, 112 from Hajong, and 136 from Manipuri individuals were observed with corresponding discrimination capacity (DC) of 0.973 for Bengali, 0.723 for Rakhine, 0.743 for Marma, 0.794 for Hajong, and 0.720 for Manipuri groups, respectively. In order to investigate genetic relationship and the pattern of paternal contributions of the studied population, a comparison of the studied data with the published data from Y-STR haplotype reference database (YHRD) was conducted based on analysis of molecular variance (AMOVA). Construction of neighbour-joining tree revealed that the Rakhine population lies closer to a clade consisting, Korean and Japanese population. The Hajong population showed close affinity with Riang (Tripura, India) tribe followed by Marma population. On the other hand, Manipuri group is closely related to Thai population followed by Tamil and mainstream Bengali population.

Keywords:  Bangladeshi; Haplotype; Population; STR; Y-chromosome

Mesh:

Year:  2018        PMID: 30143861     DOI: 10.1007/s00414-018-1915-4

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  11 in total

Review 1.  DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis.

Authors:  L Gusmão; J M Butler; A Carracedo; P Gill; M Kayser; W R Mayr; N Morling; M Prinz; L Roewer; C Tyler-Smith; P M Schneider
Journal:  Forensic Sci Int       Date:  2006-03-10       Impact factor: 2.395

2.  Development and validation of the AmpFlSTR Yfiler PCR amplification kit: a male specific, single amplification 17 Y-STR multiplex system.

Authors:  Julio J Mulero; Chien Wei Chang; Lisa M Calandro; Robert L Green; Yixin Li; Cassie L Johnson; Lori K Hennessy
Journal:  J Forensic Sci       Date:  2006-01       Impact factor: 1.832

3.  Y chromosome haplotype reference database (YHRD): update.

Authors:  Sascha Willuweit; Lutz Roewer
Journal:  Forensic Sci Int Genet       Date:  2007-03-02       Impact factor: 4.882

4.  Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material.

Authors:  P S Walsh; D A Metzger; R Higuchi
Journal:  Biotechniques       Date:  1991-04       Impact factor: 1.993

5.  Population genetics of 17 Y-chromosomal STRs loci in Garo and Santal tribal populations in Bangladesh.

Authors:  Mahamud Hasan; Pilu Momtaz; Ismail Hosen; Sudipta Arka Das; Sharif Akhteruzzaman
Journal:  Int J Legal Med       Date:  2014-02-28       Impact factor: 2.686

6.  Phylogenetic and forensic studies of the Bangladeshi population using next-generation PowerPlex® Y23 STR marker system.

Authors:  Md Mahamud Hasan; Pilu Momtaz; Tania Hossain; Ashish Kumar Mazumder; Md Jabedul Alam Khondaker; Abu Sufian; Md Niaz Makhdum; Sharif Akhteruzzaman
Journal:  Int J Legal Med       Date:  2016-04-07       Impact factor: 2.686

7.  Haplotype diversity of 16 Y-chromosomal STRs in three main ethnic populations (Malays, Chinese and Indians) in Malaysia.

Authors:  Yuet Meng Chang; Revathi Perumal; Phoon Yoong Keat; Daniel L C Kuehn
Journal:  Forensic Sci Int       Date:  2006-02-02       Impact factor: 2.395

8.  Null allele sequence structure at the DYS448 locus and implications for profile interpretation.

Authors:  Bruce Budowle; Xavier G Aranda; Robert E Lagace; Lori K Hennessy; John V Planz; Manuel Rodriguez; Arthur J Eisenberg
Journal:  Int J Legal Med       Date:  2008-06-26       Impact factor: 2.686

9.  Characterization of deletions in the DYS385 flanking region and null alleles associated with AZFc microdeletions in Koreans.

Authors:  Myung Jin Park; Kyoung-Jin Shin; Na Young Kim; Woo Ick Yang; Sang-Ho Cho; Hwan Young Lee
Journal:  J Forensic Sci       Date:  2008-03       Impact factor: 1.832

10.  Diversity of 26-locus Y-STR haplotypes in a Nepalese population sample: isolation and drift in the Himalayas.

Authors:  Emma J Parkin; Thirsa Kraayenbrink; Jean Robert M L Opgenort; George L van Driem; Nirmal Man Tuladhar; Peter de Knijff; Mark A Jobling
Journal:  Forensic Sci Int       Date:  2006-06-15       Impact factor: 2.395

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