Literature DB >> 30143075

Research Techniques Made Simple: Genome-Wide Homozygosity/Autozygosity Mapping Is a Powerful Tool for Identifying Candidate Genes in Autosomal Recessive Genetic Diseases.

Hassan Vahidnezhad1, Leila Youssefian2, Ali Jazayeri3, Jouni Uitto4.   

Abstract

Homozygosity mapping (HM), also known as autozygosity mapping, was originally used to map genes underlying homozygous autosomal recessive Mendelian diseases in patients from closely genetically related populations, followed by Sanger sequencing. With the increase in use of next-generation sequencing approaches, such as whole-exome sequencing and whole-genome sequencing, together with advanced bioinformatics filtering approaches, HM is again emerging as a powerful method for the identification of genes involved in disease etiology. In addition to its usefulness for research, HM is effective in clinical genetic services, increasing the efficiency of molecular diagnostics. For autosomal recessive Mendelian disorders with extensive genetic heterogeneity, HM can reduce both cost and turnaround time of mutation detection in the context of next-generation sequencing and can obviate expensive screening, such as biochemical testing in the setting of metabolic genodermatoses or antigen mapping for epidermolysis bullosa. It is therefore important for dermatology clinicians and researchers to understand the processes, principal uses, and advantages and limitations of HM when ordering or performing genetic tests for patients affected by heritable skin disorders.
Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2018        PMID: 30143075     DOI: 10.1016/j.jid.2018.06.170

Source DB:  PubMed          Journal:  J Invest Dermatol        ISSN: 0022-202X            Impact factor:   8.551


  13 in total

1.  Inherited Interleukin 2-Inducible T-Cell (ITK) Kinase Deficiency in Siblings With Epidermodysplasia Verruciformis and Hodgkin Lymphoma.

Authors:  Leila Youssefian; Hassan Vahidnezhad; Mehdi Yousefi; Amir Hossein Saeidian; Arghavan Azizpour; Andrew Touati; Neda Nikbakht; Kambiz Kamyab- Hesari; Mohammad Mahdi Adib-Sereshki; Sirous Zeinali; Behzad Mansoori; Ali Jazayeri; Razieh Karamzadeh; Paolo Fortina; Emmanuelle Jouanguy; Jean-Laurent Casanova; Jouni Uitto
Journal:  Clin Infect Dis       Date:  2019-05-17       Impact factor: 9.079

2.  Whole-Transcriptome Analysis by RNA Sequencing for Genetic Diagnosis of Mendelian Skin Disorders in the Context of Consanguinity.

Authors:  Leila Youssefian; Amir Hossein Saeidian; Fahimeh Palizban; Atefeh Bagherieh; Fahimeh Abdollahimajd; Soheila Sotoudeh; Nikoo Mozafari; Rahele A Farahani; Hamidreza Mahmoudi; Sadegh Babashah; Masoud Zabihi; Sirous Zeinali; Paolo Fortina; Julio C Salas-Alanis; Andrew P South; Hassan Vahidnezhad; Jouni Uitto
Journal:  Clin Chem       Date:  2021-06-01       Impact factor: 8.327

Review 3.  Research Techniques Made Simple: Whole-Transcriptome Sequencing by RNA-Seq for Diagnosis of Monogenic Disorders.

Authors:  Amir Hossein Saeidian; Leila Youssefian; Hassan Vahidnezhad; Jouni Uitto
Journal:  J Invest Dermatol       Date:  2020-06       Impact factor: 8.551

4.  Recalcitrant Cutaneous Warts in a Family with Inherited ICOS Deficiency.

Authors:  Leila Youssefian; Amir Hossein Saeidian; Ali Reza Tavasoli; Elnaz Kalamati; Karim Naghipoor; Amir Hozhabrpour; Mehrnaz Mesdaghi; Zahra Saffarian; Hamidreza Mahmoudi; Mohammad Nabavi; Sima Shokri; Sirous Zeinali; Vivien Béziat; Jean-Laurent Casanova; Emmanuelle Jouanguy; Jouni Uitto; Hassan Vahidnezhad
Journal:  J Invest Dermatol       Date:  2022-03-08       Impact factor: 7.590

Review 5.  Molecular Genetics of Keratinization Disorders - What's New About Ichthyosis.

Authors:  Jouni Uitto; Leila Youssefian; Amir Hossein Saeidian; Hassan Vahidnezhad
Journal:  Acta Derm Venereol       Date:  2020-03-25       Impact factor: 3.875

6.  Hypotrichosis with juvenile macular dystrophy: Combination of whole-genome sequencing and genome-wide homozygosity mapping identifies a large deletion in CDH3 initially undetected by whole-exome sequencing-A lesson from next-generation sequencing.

Authors:  Amir Hossein Saeidian; Hassan Vahidnezhad; Leila Youssefian; Soheila Sotudeh; Meisam Sargazi; Sirous Zeinali; Jouni Uitto
Journal:  Mol Genet Genomic Med       Date:  2019-09-27       Impact factor: 2.183

7.  Clinical practice guidelines for laboratory diagnosis of epidermolysis bullosa.

Authors:  C Has; L Liu; M C Bolling; A V Charlesworth; M El Hachem; M J Escámez; I Fuentes; S Büchel; R Hiremagalore; G Pohla-Gubo; P C van den Akker; K Wertheim-Tysarowska; G Zambruno
Journal:  Br J Dermatol       Date:  2019-08-09       Impact factor: 9.302

8.  Mutational spectrum of autosomal recessive limb-girdle muscular dystrophies in a cohort of 112 Iranian patients and reporting of a possible founder effect.

Authors:  Marzieh Mojbafan; Reza Bahmani; Samira Dabbagh Bagheri; Zohreh Sharifi; Sirous Zeinali
Journal:  Orphanet J Rare Dis       Date:  2020-01-14       Impact factor: 4.123

9.  Improved Diagnosis of Rare Disease Patients through Systematic Detection of Runs of Homozygosity.

Authors:  Leslie Matalonga; Steven Laurie; Anastasios Papakonstantinou; Davide Piscia; Elisabetta Mereu; Gemma Bullich; Rachel Thompson; Rita Horvath; Luis Pérez-Jurado; Olaf Riess; Ivo Gut; Gert-Jan van Ommen; Hanns Lochmüller; Sergi Beltran
Journal:  J Mol Diagn       Date:  2020-06-30       Impact factor: 5.568

10.  Phenotypic and genotypic characterization of families with complex intellectual disability identified pathogenic genetic variations in known and novel disease genes.

Authors:  Hossein Darvish; Luis J Azcona; Abbas Tafakhori; Roxana Mesias; Azadeh Ahmadifard; Elena Sanchez; Arman Habibi; Elham Alehabib; Amir Hossein Johari; Babak Emamalizadeh; Faezeh Jamali; Marjan Chapi; Javad Jamshidi; Yuji Kajiwara; Coro Paisán-Ruiz
Journal:  Sci Rep       Date:  2020-01-22       Impact factor: 4.379

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