Literature DB >> 30141918

Minimal Heterochiral de Novo Designed 4Fe-4S Binding Peptide Capable of Robust Electron Transfer.

J Dongun Kim1, Douglas H Pike2, Alexei M Tyryshkin1, G V T Swapna2,3, Hagai Raanan1, Gaetano T Montelione2,3,4, Vikas Nanda2,4, Paul G Falkowski1,5.   

Abstract

Ambidoxin is a designed, minimal dodecapeptide consisting of alternating L and D amino acids that binds a 4Fe-4S cluster through ligand-metal interactions and an extensive network of second-shell hydrogen bonds. The peptide can withstand hundreds of oxidation-reduction cycles at room temperature. Ambidoxin suggests how simple, prebiotic peptides may have achieved robust redox catalysis on the early Earth.

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Year:  2018        PMID： 30141918      PMCID： PMC7050467          DOI： 10.1021/jacs.8b07553

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   16.383


  35 in total

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Review 2.  Structure, function, and formation of biological iron-sulfur clusters.

Authors:  Deborah C Johnson; Dennis R Dean; Archer D Smith; Michael K Johnson
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

Review 3.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

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Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

Review 4.  The Role of Microbial Electron Transfer in the Coevolution of the Biosphere and Geosphere.

Authors:  Benjamin I Jelen; Donato Giovannelli; Paul G Falkowski
Journal:  Annu Rev Microbiol       Date:  2016-06-08       Impact factor: 15.500

5.  De novo design of a redox-active minimal rubredoxin mimic.

Authors:  Vikas Nanda; Michael M Rosenblatt; Artur Osyczka; Hidetoshi Kono; Zelleka Getahun; P Leslie Dutton; Jeffery G Saven; William F Degrado
Journal:  J Am Chem Soc       Date:  2005-04-27       Impact factor: 15.419

6.  Synthesis, structure and activity of artificial, rationally designed catalytic polypeptides.

Authors:  K Johnsson; R K Allemann; H Widmer; S A Benner
Journal:  Nature       Date:  1993-10-07       Impact factor: 49.962

7.  Ferredoxin and ferredoxin-heme maquettes.

Authors:  B R Gibney; S E Mulholland; F Rabanal; P L Dutton
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8.  SCOPe: Manual Curation and Artifact Removal in the Structural Classification of Proteins - extended Database.

Authors:  John-Marc Chandonia; Naomi K Fox; Steven E Brenner
Journal:  J Mol Biol       Date:  2016-11-30       Impact factor: 5.469

Review 9.  Structural principles for computational and de novo design of 4Fe-4S metalloproteins.

Authors:  Vikas Nanda; Stefan Senn; Douglas H Pike; Agustina Rodriguez-Granillo; Will A Hansen; Sagar D Khare; Dror Noy
Journal:  Biochim Biophys Acta       Date:  2015-10-09

10.  De novo computational design of retro-aldol enzymes.

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Journal:  Science       Date:  2008-03-07       Impact factor: 47.728
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  11 in total

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Authors:  Andrew C Mutter; Alexei M Tyryshkin; Ian J Campbell; Saroj Poudel; George N Bennett; Jonathan J Silberg; Vikas Nanda; Paul G Falkowski
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-01       Impact factor: 11.205

2.  Small protein folds at the root of an ancient metabolic network.

Authors:  Hagai Raanan; Saroj Poudel; Douglas H Pike; Vikas Nanda; Paul G Falkowski
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-18       Impact factor: 11.205

3.  Probing complexity: thermodynamics and computational mechanics approaches to origins studies.

Authors:  Stuart J Bartlett; Patrick Beckett
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4.  Radical S-adenosylmethionine maquette chemistry: Cx3Cx2C peptide coordinated redox active [4Fe-4S] clusters.

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6.  Prebiotic Environments with Mg2+ and Thiophilic Metal Ions Increase the Thermal Stability of Cysteine and Non-cysteine Peptides.

Authors:  Daniele Rossetto; Luca Valer; Noël Yeh Martín; Graziano Guella; Yayoi Hongo; Sheref S Mansy
Journal:  ACS Earth Space Chem       Date:  2022-04-15       Impact factor: 3.556

7.  Quantifying Mineral-Ligand Structural Similarities: Bridging the Geological World of Minerals with the Biological World of Enzymes.

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Journal:  Life (Basel)       Date:  2020-12-10

8.  Transition metals enhance prebiotic depsipeptide oligomerization reactions involving histidine.

Authors:  Moran Frenkel-Pinter; Alyssa B Sargon; Jennifer B Glass; Nicholas V Hud; Loren Dean Williams
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9.  Metals Are Integral to Life as We Know It.

Authors:  Daniele Rossetto; Sheref S Mansy
Journal:  Front Cell Dev Biol       Date:  2022-03-04

10.  1H, 13C and 15N assignment of the paramagnetic high potential iron-sulfur protein (HiPIP) PioC from Rhodopseudomonas palustris TIE-1.

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