Literature DB >> 30136973

RetainVis: Visual Analytics with Interpretable and Interactive Recurrent Neural Networks on Electronic Medical Records.

Bum Chul Kwon, Min-Je Choi, Joanne Taery Kim, Edward Choi, Young Bin Kim, Soonwook Kwon, Jimeng Sun, Jaegul Choo.   

Abstract

We have recently seen many successful applications of recurrent neural networks (RNNs) on electronic medical records (EMRs), which contain histories of patients' diagnoses, medications, and other various events, in order to predict the current and future states of patients. Despite the strong performance of RNNs, it is often challenging for users to understand why the model makes a particular prediction. Such black-box nature of RNNs can impede its wide adoption in clinical practice. Furthermore, we have no established methods to interactively leverage users' domain expertise and prior knowledge as inputs for steering the model. Therefore, our design study aims to provide a visual analytics solution to increase interpretability and interactivity of RNNs via a joint effort of medical experts, artificial intelligence scientists, and visual analytics researchers. Following the iterative design process between the experts, we design, implement, and evaluate a visual analytics tool called RetainVis, which couples a newly improved, interpretable, and interactive RNN-based model called RetainEX and visualizations for users' exploration of EMR data in the context of prediction tasks. Our study shows the effective use of RetainVis for gaining insights into how individual medical codes contribute to making risk predictions, using EMRs of patients with heart failure and cataract symptoms. Our study also demonstrates how we made substantial changes to the state-of-the-art RNN model called RETAIN in order to make use of temporal information and increase interactivity. This study will provide a useful guideline for researchers that aim to design an interpretable and interactive visual analytics tool for RNNs.

Entities:  

Year:  2018        PMID: 30136973     DOI: 10.1109/TVCG.2018.2865027

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  13 in total

1.  EffiCare: Better Prognostic Models via Resource-Efficient Health Embeddings.

Authors:  Nils Rethmeier; Necip Oguz Serbetci; Sebastian Möller; Roland Roller
Journal:  AMIA Annu Symp Proc       Date:  2021-01-25

2.  Explainable artificial intelligence models using real-world electronic health record data: a systematic scoping review.

Authors:  Seyedeh Neelufar Payrovnaziri; Zhaoyi Chen; Pablo Rengifo-Moreno; Tim Miller; Jiang Bian; Jonathan H Chen; Xiuwen Liu; Zhe He
Journal:  J Am Med Inform Assoc       Date:  2020-07-01       Impact factor: 4.497

3.  THALIS: Human-Machine Analysis of Longitudinal Symptoms in Cancer Therapy.

Authors:  Carla Floricel; Nafiul Nipu; Mikayla Biggs; Andrew Wentzel; Guadalupe Canahuate; Lisanne Van Dijk; Abdallah Mohamed; C David Fuller; G Elisabeta Marai
Journal:  IEEE Trans Vis Comput Graph       Date:  2021-12-24       Impact factor: 4.579

4.  RAMPVIS: Answering the challenges of building visualisation capabilities for large-scale emergency responses.

Authors:  M Chen; A Abdul-Rahman; D Archambault; J Dykes; P D Ritsos; A Slingsby; T Torsney-Weir; C Turkay; B Bach; R Borgo; A Brett; H Fang; R Jianu; S Khan; R S Laramee; L Matthews; P H Nguyen; R Reeve; J C Roberts; F P Vidal; Q Wang; J Wood; K Xu
Journal:  Epidemics       Date:  2022-04-28       Impact factor: 5.324

5.  Interpreting patient-Specific risk prediction using contextual decomposition of BiLSTMs: application to children with asthma.

Authors:  Rawan AlSaad; Qutaibah Malluhi; Ibrahim Janahi; Sabri Boughorbel
Journal:  BMC Med Inform Decis Mak       Date:  2019-11-08       Impact factor: 2.796

6.  Facilitating the Development of Deep Learning Models with Visual Analytics for Electronic Health Records.

Authors:  Cinyoung Hur; JeongA Wi; YoungBin Kim
Journal:  Int J Environ Res Public Health       Date:  2020-11-10       Impact factor: 3.390

7.  Unbox the black-box for the medical explainable AI via multi-modal and multi-centre data fusion: A mini-review, two showcases and beyond.

Authors:  Guang Yang; Qinghao Ye; Jun Xia
Journal:  Inf Fusion       Date:  2022-01       Impact factor: 12.975

8.  Marrying Medical Domain Knowledge With Deep Learning on Electronic Health Records: A Deep Visual Analytics Approach.

Authors:  Rui Li; Changchang Yin; Samuel Yang; Buyue Qian; Ping Zhang
Journal:  J Med Internet Res       Date:  2020-09-28       Impact factor: 5.428

9.  Ada-WHIPS: explaining AdaBoost classification with applications in the health sciences.

Authors:  Julian Hatwell; Mohamed Medhat Gaber; R Muhammad Atif Azad
Journal:  BMC Med Inform Decis Mak       Date:  2020-10-02       Impact factor: 2.796

10.  Predicting patient-level new-onset atrial fibrillation from population-based nationwide electronic health records: protocol of FIND-AF for developing a precision medicine prediction model using artificial intelligence.

Authors:  Ramesh Nadarajah; Jianhua Wu; Alejandro F Frangi; David Hogg; Campbell Cowan; Chris Gale
Journal:  BMJ Open       Date:  2021-11-02       Impact factor: 2.692

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