Literature DB >> 30136425

Co-occurrence network analysis reveals thermodynamics-driven microbial interactions in methanogenic bioreactors.

Takashi Narihiro1,2, Masaru K Nobu1, Ben T W Bocher3, Ran Mei1, Wen-Tso Liu1.   

Abstract

Methanogenic bioreactors have been applied to treat purified terephthalic acid (PTA) wastewater containing complex aromatic compounds, such as terephthalic acid, para-toluic acid and benzoic acid. This study characterized the interaction of microbial populations in 42 samples obtained from 10 PTA-degrading methanogenic bioreactors. Approximately, 54 dominant populations (11 methanogens, 8 syntrophs and 35 functionally unknown clades) that represented 73.9% of total 16S rRNA gene iTag sequence reads were identified. Co-occurrence analysis based on the abundance of dominant OTUs showed two non-overlapping networks centred around aromatic compound- (group AR: Syntrophorhabdaceae, Syntrophus and Pelotomaculum) and fatty acid- (group FA: Smithella and Syntrophobacter) degrading syntrophs. Group AR syntrophs have no direct correlation with hydrogenotrophic methanogens, while those from group FA do. As degradation of aromatic compounds has a wider thermodynamic window than fatty acids, Group AR syntrophs may be less influenced by fluctuations in hydrogenotrophic methanogen abundance or may non-specifically interact with diverse methanogens. In both groups, network analysis reveals full-scale- and lab-scale-specific uncultivated taxa that may mediate interactions between syntrophs and methanogens, suggesting that those uncultivated taxa may support the degradation of aromatic compounds through uncharted ecophysiological traits. These observations suggest that organisms from multiple niches orchestrate their metabolic capacity in multiple interaction networks to effectively degrade PTA wastewater.
© 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

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Year:  2018        PMID: 30136425     DOI: 10.1111/1758-2229.12689

Source DB:  PubMed          Journal:  Environ Microbiol Rep        ISSN: 1758-2229            Impact factor:   3.541


  4 in total

1.  Coupling growth kinetics modeling with machine learning reveals microbial immigration impacts and identifies key environmental parameters in a biological wastewater treatment process.

Authors:  Ran Mei; Jinha Kim; Fernanda P Wilson; Benjamin T W Bocher; Wen-Tso Liu
Journal:  Microbiome       Date:  2019-04-17       Impact factor: 14.650

2.  Microbial co-occurrence network topological properties link with reactor parameters and reveal importance of low-abundance genera.

Authors:  Bing Guo; Lei Zhang; Huijuan Sun; Mengjiao Gao; Najiaowa Yu; Qianyi Zhang; Anqi Mou; Yang Liu
Journal:  NPJ Biofilms Microbiomes       Date:  2022-01-17       Impact factor: 7.290

3.  Metagenomic and Metatranscriptomic Analyses Revealed Uncultured Bacteroidales Populations as the Dominant Proteolytic Amino Acid Degraders in Anaerobic Digesters.

Authors:  Ran Mei; Masaru K Nobu; Takashi Narihiro; Wen-Tso Liu
Journal:  Front Microbiol       Date:  2020-10-30       Impact factor: 5.640

4.  Highly Distinct Microbial Communities in Elevated Strings and Submerged Flarks in the Boreal Aapa-Type Mire.

Authors:  Andrey L Rakitin; Shahjahon Begmatov; Alexey V Beletsky; Dmitriy A Philippov; Vitaly V Kadnikov; Andrey V Mardanov; Svetlana N Dedysh; Nikolai V Ravin
Journal:  Microorganisms       Date:  2022-01-13
  4 in total

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