| Literature DB >> 30135952 |
Colleen S Peterson1, Shuo Huang1, Samantha A Lee1, A V Ferguson2, W Mark Fry1.
Abstract
Early postnatal overnutrition in humans is associated with long-term negative outcomes including obesity, increased risk of type-II diabetes, and cardiovascular disease. Hypothalamic neurons from rodents exposed to early postnatal overnutrition show altered expression of satiety signals and receptors, and exhibit altered responses to many satiety signals, suggesting a hypothalamic link between early overnutrition and development of these sequelae. Importantly, several hypothalamic nuclei receive information regarding circulating hormones (such as insulin, leptin and ghrelin) from the subfornical organ (SFO), a forebrain sensory circumventricular organ which lacks a blood brain barrier. Previous transcriptomic studies indicate that challenges to energy balance and hydration status stimulate changes in gene expression within the SFO, including genes encoding ion channels and receptors. In order to determine if early postnatal overnutrition also causes changes in SFO gene expression which may be associated with homeostatic dysregulation, we performed whole transcriptome sequencing on SFO tissue from rats raised in small (4 pups), or control (large, 12 pups) litters. Illumina RNA sequencing was performed on SFO tissue from rats raised from small and large litters, and read sequences were aligned to the Rat Rnor_6.0 genome. Control data were further compared to previously published microarray data set for validation. We found statistically significant (p < 0.05) changes in expression of 12 transcripts, three of which have likely roles in neuronal excitability, neurite outgrowth and differentiation, and food intake (Manf, Slc24a4, Cracr2b). Additionally, gene ontology analysis identified a trend among significantly altered transcripts in roles for oxidative stress response. We conclude that the SFO transcriptome is subtly altered by early postnatal overnutrition, and recommend further investigation of the effect of early postnatal overnutrition on SFO physiology and morphology.Entities:
Keywords: Microarray; Postnatal overnutrition; RNA sequencing; Subfornical organ; Transcriptome
Year: 2018 PMID: 30135952 PMCID: PMC6095096 DOI: 10.1016/j.ibror.2018.06.001
Source DB: PubMed Journal: IBRO Rep ISSN: 2451-8301
Fig. 2Overlap between previously published microarray data and RNA sequencing transcriptomes. Only transcripts which could be mapped between the RNAseq dataset and microarray dataset via Ensembl IDs were included. 8941 unique transcripts (unique Ensembl IDs) were detected by both the microarray and RNAseq. 3586 and 174 transcripts were exclusively detected by RNAseq and microarray respectively.
Fig. 3Comparison of rat subfornical organ relative expression (FPKM) values to publicly available rat subfornical organ Affymetrix microarray relative expression (intensity) (Hindmarch et al., 2008). Relative expression levels were determined based on log2 transformed average expression values in all control samples in each experiment. 8941 unique Ensembl gene ID annotated transcripts detected by both methods are included; of these 1969 Affy IDs map to the same Ensembl identified as at least one other Affy ID, such that 10,910 points are included. Good concordance exists between the two methods despite differing experimental conditions, as demonstrated by the Pearson correlation coefficient (r = 0.65455).
Fig. 1Fold regulation of transcripts significantly changed (p < 0.05; * indicates p < 0.05; ** p < 0.01) by postnatal overnutrition in rat subfornical organ. Cracr2b = EF-hand calcium-binding domain-containing protein 4A; Elovl1 = Elongation of very long chain fatty acids protein 1; LOC100910245 = Ribose-phosphate pyrophosphokinase 2-like; Creld2 = Cysteine-rich with EGF-like domain protein 2; AABR07030823.1 is a pseudogene; Manf = Mesencephalic astrocyte-derived neurotrophic factor; Hsph1 = Heat shock protein 105 kDa; Chordc1 = Cysteine and histidine-rich domain-containing protein 1; Ahsa2 = AHA1, activator of heat shock protein ATPase 2 (p = 0.01485); Slc24a4 = Solute carrier family 24 member 4; Hspb1 = Heat shock 27 kDa protein 1. Dotted lines indicate fold-change cut-offs, greater than 1.15 fold up- or downregulation.