Literature DB >> 3013330

Methodology for increased precision in saturation transfer electron paramagnetic resonance studies of rotational dynamics.

T C Squier, D D Thomas.   

Abstract

Microsecond rotational motions of nitroxide spin labels are measured primarily with saturation transfer electron paramagnetic resonance (ST-EPR). In the present study we have used model system experiments to quantitatively evaluate different ST-EPR spectral parameters, both in-phase and out-of-phase, with an emphasis on techniques for suppressing the interference from weakly immobilized probes. Analyses of both systematic and random errors show that maximum sensitivity to small changes in correlation time and minimum ambiguity of interpretation are best achieved by combining measurements of both spectral line-shape, i.e., the ratio of line-heights, and spectral intensity, i.e., the absolute amplitude of either a position within a spectrum or a spectral integral. Errors in the measurement of correlation times for the two types of parameters tend to be complementary. Integrated intensity parameters are particularly useful in measuring microsecond probe motions in the presence of weakly immobilized components. We confirm that integrated intensity parameters are sometimes effective in rejecting signals from weakly immobilized probes, but the effectiveness of this rejection is more limited than previously supposed and depends on the type of parameter being measured. We describe procedures for evaluating and minimizing errors due to weakly immobilized probes, emphasizing the advantages of a new kind of intensity parameter obtained from integrated in-phase spectra. We provide detailed descriptions of experimental procedures, along with calibration plots of the most useful spectral parameters vs. rotational correlation time, which should make it possible for workers in other laboratories, using different instruments and sample geometries, to reproduce spectra quantitatively and to make accurate correlation time measurements.

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Year:  1986        PMID: 3013330      PMCID: PMC1329543          DOI: 10.1016/S0006-3495(86)83720-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  17 in total

1.  The quantitative measurement of rotational motion of the subfragment-1 region of myosin by saturation transfer epr spectroscopy.

Authors:  D D Thomas; J C Seidel; J Gergely; J S Hyde
Journal:  J Supramol Struct       Date:  1975

2.  New EPR methods for the study of very slow motion: application to spin-labeled hemoglobin.

Authors:  J S Hyde; D D Thomas
Journal:  Ann N Y Acad Sci       Date:  1973-12-31       Impact factor: 5.691

3.  The effects of actin on the electron spin resonance of spin-labeled myosin.

Authors:  J C Seidel
Journal:  Arch Biochem Biophys       Date:  1973-08       Impact factor: 4.013

4.  The double role of water in quantitative electron spin resonance (ESR) determinations on samples of biological materials.

Authors:  T Sarna; S Lukiewicz
Journal:  Folia Histochem Cytochem (Krakow)       Date:  1971

5.  EPR relaxation of slowly moving flavin radicals: "anomalous" saturation.

Authors:  J S Hyde; L E Eriksson; A Ehrenberg
Journal:  Biochim Biophys Acta       Date:  1970-12-29

6.  Spin-labeled hemoglobin crystals.

Authors:  S Ohnishi; J C Boeyens; H M McConnell
Journal:  Proc Natl Acad Sci U S A       Date:  1966-09       Impact factor: 11.205

7.  35-GHz (Q-band) saturation transfer electron paramagnetic resonance studies of rotational diffusion.

Authors:  M E Johnson; J S Hyde
Journal:  Biochemistry       Date:  1981-05-12       Impact factor: 3.162

8.  Molecular motion in phospholipid bilayers in the gel phase: long axis rotation.

Authors:  D Marsh
Journal:  Biochemistry       Date:  1980-04-15       Impact factor: 3.162

9.  Saturation transfer electron spin resonance spectroscopy as a probe of anisotropic motion in model membrane systems.

Authors:  M Delmelle; K W Butler; I C Smith
Journal:  Biochemistry       Date:  1980-02-19       Impact factor: 3.162

10.  Spin-labeled Neurospora mitochondria.

Authors:  A Keith; G Bulfield; W Snipes
Journal:  Biophys J       Date:  1970-07       Impact factor: 4.033

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  29 in total

1.  The sensitivity of saturation transfer electron paramagnetic resonance spectra to restricted amplitude uniaxial rotational diffusion.

Authors:  E J Hustedt; A H Beth
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Three distinct actin-attached structural states of myosin in muscle fibers.

Authors:  Ryan N Mello; David D Thomas
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

3.  Intermolecular interactions in the mechanism of skeletal muscle sarcoplasmic reticulum Ca(2+)-ATPase (SERCA1): evidence for a triprotomer.

Authors:  James E Mahaney; David D Thomas; Iain K Farrance; Jeffrey P Froehlich
Journal:  Biochemistry       Date:  2008-12-23       Impact factor: 3.162

4.  The uncoupling of the effects of formins on the local and global dynamics of actin filaments.

Authors:  Tünde Kupi; Pál Gróf; Miklós Nyitrai; József Belágyi
Journal:  Biophys J       Date:  2009-04-08       Impact factor: 4.033

5.  Distance and dynamics determination by W-band DEER and W-band ST-EPR.

Authors:  Likai Song; Mioara Larion; Jean Chamoun; Marco Bonora; Piotr G Fajer
Journal:  Eur Biophys J       Date:  2009-12-09       Impact factor: 1.733

6.  Structural dynamics of the actomyosin complex probed by a bifunctional spin label that cross-links SH1 and SH2.

Authors:  Andrew R Thompson; Nariman Naber; Clyde Wilson; Roger Cooke; David D Thomas
Journal:  Biophys J       Date:  2008-09-19       Impact factor: 4.033

7.  Selective detection of the rotational dynamics of the protein-associated lipid hydrocarbon chains in sarcoplasmic reticulum membranes.

Authors:  T C Squier; D D Thomas
Journal:  Biophys J       Date:  1989-10       Impact factor: 4.033

8.  Conformationally trapping the actin-binding cleft of myosin with a bifunctional spin label.

Authors:  Rebecca J Moen; David D Thomas; Jennifer C Klein
Journal:  J Biol Chem       Date:  2012-12-18       Impact factor: 5.157

9.  Molecular dynamics in mouse atrial tumor sarcoplasmic reticulum.

Authors:  J C Voss; J E Mahaney; L R Jones; D D Thomas
Journal:  Biophys J       Date:  1995-05       Impact factor: 4.033

10.  The influence of divalent cations on the dynamic properties of actin filaments: a spectroscopic study.

Authors:  G Hild; M Nyitrai; J Belágyi; B Somogyi
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

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