Literature DB >> 30129407

Recent Advances in the Machine Learning-Based Drug-Target Interaction Prediction.

Wen Zhang1, Weiran Lin1, Ding Zhang1, Siman Wang1, Jingwen Shi2, Yanqing Niu3.   

Abstract

BACKGROUND: The identification of drug-target interactions is a crucial issue in drug discovery. In recent years, researchers have made great efforts on the drug-target interaction predictions, and developed databases, software and computational methods.
RESULTS: In the paper, we review the recent advances in machine learning-based drug-target interaction prediction. First, we briefly introduce the datasets and data, and summarize features for drugs and targets which can be extracted from different data. Since drug-drug similarity and target-target similarity are important for many machine learning prediction models, we introduce how to calculate similarities based on data or features. Different machine learningbased drug-target interaction prediction methods can be proposed by using different features or information. Thus, we summarize, analyze and compare different machine learning-based prediction methods.
CONCLUSION: This study provides the guide to the development of computational methods for the drug-target interaction prediction. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.

Keywords:  Machine learning; drug discovery; drug repurposing; drug-target interaction; molecular fingerprint; similarity measure.

Mesh:

Year:  2019        PMID: 30129407     DOI: 10.2174/1389200219666180821094047

Source DB:  PubMed          Journal:  Curr Drug Metab        ISSN: 1389-2002            Impact factor:   3.731


  13 in total

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Authors:  Jesua I Law; David A Crawford; Joanne B Adams; Adolph V Lombardi
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2.  DTiGEMS+: drug-target interaction prediction using graph embedding, graph mining, and similarity-based techniques.

Authors:  Maha A Thafar; Rawan S Olayan; Haitham Ashoor; Somayah Albaradei; Vladimir B Bajic; Xin Gao; Takashi Gojobori; Magbubah Essack
Journal:  J Cheminform       Date:  2020-06-29       Impact factor: 5.514

3.  Trader as a new optimization algorithm predicts drug-target interactions efficiently.

Authors:  Yosef Masoudi-Sobhanzadeh; Yadollah Omidi; Massoud Amanlou; Ali Masoudi-Nejad
Journal:  Sci Rep       Date:  2019-06-27       Impact factor: 4.379

4.  Identifying GPCR-drug interaction based on wordbook learning from sequences.

Authors:  Pu Wang; Xiaotong Huang; Wangren Qiu; Xuan Xiao
Journal:  BMC Bioinformatics       Date:  2020-04-20       Impact factor: 3.169

5.  Drug-target interaction prediction with tree-ensemble learning and output space reconstruction.

Authors:  Konstantinos Pliakos; Celine Vens
Journal:  BMC Bioinformatics       Date:  2020-02-07       Impact factor: 3.169

6.  Identifying protein subcellular localisation in scientific literature using bidirectional deep recurrent neural network.

Authors:  Rakesh David; Rhys-Joshua D Menezes; Jan De Klerk; Ian R Castleden; Cornelia M Hooper; Gustavo Carneiro; Matthew Gilliham
Journal:  Sci Rep       Date:  2021-01-18       Impact factor: 4.379

Review 7.  Machine learning approaches and databases for prediction of drug-target interaction: a survey paper.

Authors:  Maryam Bagherian; Elyas Sabeti; Kai Wang; Maureen A Sartor; Zaneta Nikolovska-Coleska; Kayvan Najarian
Journal:  Brief Bioinform       Date:  2021-01-18       Impact factor: 11.622

8.  Digital Orthopaedics: A Glimpse Into the Future in the Midst of a Pandemic.

Authors:  Stefano A Bini; Peter L Schilling; Shaun P Patel; Niraj V Kalore; Michael P Ast; Joseph D Maratt; Dustin J Schuett; Charles M Lawrie; Christopher C Chung; G Daxton Steele
Journal:  J Arthroplasty       Date:  2020-04-22       Impact factor: 4.757

9.  Drug-Target Interaction Prediction Based on Adversarial Bayesian Personalized Ranking.

Authors:  Yihua Ye; Yuqi Wen; Zhongnan Zhang; Song He; Xiaochen Bo
Journal:  Biomed Res Int       Date:  2021-02-10       Impact factor: 3.411

10.  Surfactants, Nanomedicines and Nanocarriers: A Critical Evaluation on Clinical Trials.

Authors:  Diego Alejandro Dri; Carlotta Marianecci; Maria Carafa; Elisa Gaucci; Donatella Gramaglia
Journal:  Pharmaceutics       Date:  2021-03-13       Impact factor: 6.321

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