| Literature DB >> 30127739 |
Chun Wang1,2, Qing Ren2, Xue-Tong Chen2,3, Zhi-Qian Song1, Zhang-Chi Ning1,2, Jia-He Gan1, Xin-Ling Ma1, Dong-Rui Liang1, Dao-Gang Guan2, Zhen-Li Liu1, Ai-Ping Lu2.
Abstract
Functional dyspepsia (FD) is a widely prevalent gastrointestinal disorder throughout the world, whereas the efficacy of current treatment in the Western countries is limited. As the symptom is equivalent to the traditional Chinese medicine (TCM) term "stuffiness and fullness," FD can be treated with Zhi-zhu Wan (ZZW) which is a kind of Chinese patent medicine. However, the "multi-component" and "multi-target" feature of Chinese patent medicine makes it challenge to elucidate the potential therapeutic mechanisms of ZZW on FD. Presently, a novel system pharmacology model including pharmacokinetic parameters, pharmacological data, and component contribution score (CS) is constructed to decipher the potential therapeutic mechanism of ZZW on FD. Finally, 61 components with favorable pharmacokinetic profiles and biological activities were obtained through ADME (absorption, distribution, metabolism, and excretion) screening in silico. The related targets of these components are identified by component targeting process followed by GO analysis and pathway enrichment analysis. And systematic analysis found that through acting on the target related to inflammation, gastrointestinal peristalsis, and mental disorder, ZZW plays a synergistic and complementary effect on FD at the pathway level. Furthermore, the component CS showed that 29 components contributed 90.18% of the total CS values of ZZW for the FD treatment, which suggested that the effective therapeutic effects of ZZW for FD are derived from all active components, not a few components. This study proposes the system pharmacology method and discovers the potent combination therapeutic mechanisms of ZZW for FD. This strategy will provide a reference method for other TCM mechanism research.Entities:
Keywords: Baizhu; Zhi-zhu Wan; Zhishi; functional dyspepsia; system pharmacology; therapeutic mechanism
Year: 2018 PMID: 30127739 PMCID: PMC6087764 DOI: 10.3389/fphar.2018.00841
Source DB: PubMed Journal: Front Pharmacol ISSN: 1663-9812 Impact factor: 5.810
Figure 1The work scheme of system pharmacology approach.
Figure 2The molecular properties of all components in Zhishi and Baizhu. Molecular properties including molecular weight (MW), oral bioavailability (OB), Caco-2 permeability (Caco-2), drug-likeness (DL), Moriguchi octanol-water partition coeff. Log P (MlogP), number of acceptor atoms for H-bonds (nHAcc), number of donor atoms for H-bonds (nHDon), and topological polar surface area (TPSA). *P < 0.01 by two tailed t-test (vs. Zhishi).
The information of active components in ZZW.
| BZ27 | Atractylenolactam | 229.32 | 56.48 | 1.23 | 0.15 | 2.85 | 1 | 1 | 29.1 | High |
| BZ42 | Anhydroatractylolide | 234.34 | 52.24 | 1.24 | 0.15 | 3.44 | 2 | 0 | 26.3 | High |
| BZ57 | 8β-methoxy-atractylenolide I | 260.33 | 54.47 | 1.02 | 0.19 | 2.63 | 3 | 0 | 35.53 | High |
| BZ59 | 14α-methyl butyryl-14-acetyl-2E,8E,10E-atractylentriol | 316.40 | 64.50 | 0.20 | 0.23 | 2.71 | 4 | 2 | 66.76 | High |
| BZ60 | 12α-methylbutyryl-14-acetyl-2E,8Z,10E-atractylentriol | 358.43 | 62.69 | 0.41 | 0.29 | 3.07 | 5 | 1 | 72.83 | High |
| BZ64 | 8β-ethoxyatractylenolide- II | 276.38 | 56.48 | 1.08 | 0.21 | 3.37 | 3 | 0 | 35.53 | High |
| BZ72 | Isoasterolide A | 232.32 | 52.65 | 1.27 | 0.15 | 3.35 | 2 | 0 | 26.3 | High |
| BZ75 | Atractylenolide VII | 262.39 | 40.99 | 1.32 | 0.14 | 3.84 | 2 | 0 | 26.3 | High |
| BZ83 | Atractylodes macrocephala | 462.68 | 45.96 | 0.85 | 0.81 | 2.47 | 3 | 1 | 46.53 | High |
| BZ84 | Biatractylolide | 462.63 | 45.96 | 0.84 | 0.81 | 5.43 | 4 | 0 | 52.6 | High |
| BZ100 | 8β-ethoxy atractylenolide-II | 276.38 | 56.48 | 1.08 | 0.21 | 3.37 | 3 | 0 | 35.53 | High |
| BZ102 | Atractylenolide I | 230.31 | 35.21 | 1.32 | 0.15 | 3.26 | 2 | 0 | 26.3 | High |
| BZ107 | Atractylone | 216.324 | 25.99 | 1.74 | 0.13 | 3.42 | 1 | 0 | 13.14 | High |
| BZ110 | AtractylenolideII | 232.32 | 43.54 | 1.31 | 0.15 | 3.35 | 2 | 0 | 26.3 | High |
| BZ119 | 3β-acetoxyatractylone | 274.36 | 34.74 | 1.19 | 0.22 | 2.83 | 3 | 0 | 39.44 | High |
| BZ124 | 14-acetyl-12-senecioyl-2E,8Z,10E-atractylentriol | 356.42 | 63.37 | 0.26 | 0.30 | 2.99 | 5 | 1 | 72.83 | High |
| BZ125 | Atractylenolide III | 248.32 | 67.29 | 0.76 | 0.17 | 2.47 | 3 | 1 | 46.53 | High |
| ZS21 | 8-geranyloxypsoralen | 338.4 | 41.92 | 1.178 | 0.418 | 3.23 | 4 | 0 | 52.58 | High |
| ZS22 | 5-Geranyloxy-7-Methoxycoumarin | 328.4 | 44.23 | 1.121 | 0.300 | 3.16 | 4 | 0 | 48.67 | High |
| ZS23 | Bergamottin | 338.4 | 41.73 | 1.161 | 0.421 | 3.23 | 4 | 0 | 52.58 | High |
| ZS24 | Phellopterin | 300.31 | 37.43 | 0.978 | 0.279 | 1.82 | 5 | 0 | 61.81 | High |
| ZS25 | Isoimperatorin | 270.28 | 47.54 | 1.057 | 0.225 | 2.14 | 4 | 0 | 52.58 | High |
| ZS26 | 6′-7′-dihydroxybergamottin | 372.41 | 70.77 | 0.12 | 0.52 | 1.66 | 6 | 2 | 93.04 | High |
| ZS27 | Epoxybergamottin | 354.4 | 57.25 | 0.922 | 0.523 | 2.48 | 5 | 0 | 65.11 | High |
| ZS28 | Cnidilin | 300.31 | 42.42 | 0.948 | 0.280 | 1.82 | 5 | 0 | 61.81 | High |
| ZS30 | Epoxyaurapten | 314.38 | 62.78 | 0.952 | 0.309 | 2.74 | 4 | 0 | 51.97 | High |
| ZS34 | Byakangelicin | 334.32 | 34.89 | −0.01 | 0.35 | 0.29 | 7 | 2 | 102.27 | High |
| ZS35 | Heraclenol | 304.29 | 72.63 | 0.08 | 0.29 | 0.57 | 6 | 2 | 93.04 | High |
| ZS36 | Oxypeucedanin hydrate | 304.29 | 33.07 | −0.06 | 0.29 | 0.57 | 6 | 2 | 93.04 | High |
| ZS39 | Isoponcimarin | 330.37 | 63.28 | 0.534 | 0.313 | 1.91 | 5 | 0 | 69.04 | High |
| ZS40 | Poncimarin | 330.37 | 79.20 | 0.754 | 0.350 | 1.99 | 5 | 0 | 64.5 | High |
| ZS41 | Byakangelicol | 316.31 | 45.21 | 0.760 | 0.356 | 1.08 | 6 | 0 | 74.34 | High |
| ZS42 | Oxypeucedanin | 286.28 | 66.18 | 0.870 | 0.297 | 1.39 | 5 | 0 | 65.11 | High |
| ZS71 | Monohydryoxy-tetramethoxyflavone | 358.34 | 45.38 | 1.19 | 0.37 | 0.4 | 7 | 1 | 87.36 | High |
| ZS73 | Diosmetin | 300.26 | 42.87 | 0.46 | 0.27 | 0.22 | 6 | 3 | 100.13 | High |
| ZS75 | 5-demethylnobiletin | 388.37 | 89.03 | 1.01 | 0.48 | 0.11 | 8 | 1 | 96.59 | High |
| ZS79 | Chrysoeriol | 300.26 | 41.60 | 0.45 | 0.27 | 0.22 | 6 | 3 | 100.13 | High |
| ZS82 | Sakuranetin | 286.28 | 40.19 | 0.59 | 0.24 | 0.96 | 5 | 2 | 75.99 | High |
| ZS85 | Acacetin | 284.26 | 37.69 | 0.65 | 0.24 | 0.77 | 5 | 2 | 79.9 | High |
| ZS86 | Isosakuranetin | 286.28 | 37.59 | 0.58 | 0.24 | 0.96 | 5 | 2 | 75.99 | High |
| ZS88 | N-methyl tyramine-O-alpha-L-rhamnopyranoside | 297.35 | 36.70 | −0.04 | 0.19 | −0.16 | 6 | 4 | 91.18 | High |
| ZS104 | Synephrine | 167.21 | 75.25 | 0.63 | 0.04 | 0.65 | 3 | 3 | 52.49 | High |
| ZS105 | 4-[(2S,3R)-5-[(E)-3-hydroxyprop-1-enyl]-7-methoxy-3-methylol-2,3-dihydrobenzofuran-2-yl]-2-methoxy-phenol | 358.39 | 50.76 | 0.03 | 0.39 | 1.09 | 6 | 3 | 88.38 | High |
| ZS107 | 5,7,4′-Trimethylapigenin | 312.32 | 39.83 | 1.01 | 0.3 | 1.25 | 5 | 0 | 57.9 | High |
| ZS108 | Hesperetin | 302.28 | 47.74 | 0.28 | 0.27 | 0.41 | 6 | 3 | 96.22 | High |
| ZS109 | 6-Methoxy aurapten | 328.4 | 31.24 | 1.01 | 0.3 | 3.16 | 4 | 0 | 48.67 | High |
| ZS110 | Ammidin | 270.28 | 34.55 | 1.13 | 0.22 | 2.14 | 4 | 0 | 52.58 | High |
| ZS115 | Naringenin | 272.26 | 59.29 | 0.28 | 0.21 | 0.71 | 5 | 3 | 86.99 | High |
| ZS117 | Tetramethoxyluteolin | 342.34 | 43.68 | 0.96 | 0.37 | 0.94 | 6 | 0 | 67.13 | High |
| ZS123 | Prangenin | 286.28 | 43.60 | 0.8 | 0.29 | 1.39 | 5 | 0 | 65.11 | High |
| ZS128 | Eriodyctiol (flavanone) | 288.25 | 41.35 | 0.05 | 0.24 | 0.16 | 6 | 4 | 107.22 | High |
| ZS130 | Hesperidin | 610.56 | 13.33 | −2.03 | 0.67 | −3.04 | 15 | 8 | 234.29 | Low |
| ZS131 | Isolimonic acid | 639.01 | 48.86 | 0.43 | 0.18 | 4.33 | 3 | 1 | 57.61 | High |
| ZS134 | Isosinensetin | 372.37 | 51.15 | 1.16 | 0.44 | 0.63 | 7 | 0 | 76.36 | High |
| ZS135 | Sinensetin | 372.37 | 50.56 | 1.12 | 0.45 | 0.63 | 7 | 0 | 76.36 | High |
| ZS137 | Luteolin | 286.24 | 36.16 | 0.19 | 0.25 | −0.03 | 6 | 4 | 111.13 | High |
| ZS143 | Naringin | 580.53 | 6.92 | −1.99 | 0.78 | −2.77 | 14 | 8 | 225.06 | Low |
| ZS144 | Narirutin | 580.53 | 8.15 | −1.8 | 0.75 | −2.77 | 14 | 8 | 225.06 | Low |
| ZS145 | Neohesperidin_qt | 302.28 | 71.17 | 0.26 | 0.27 | 0.41 | 6 | 3 | 96.22 | High |
| ZS146 | Nobiletin | 402.39 | 61.67 | 1.05 | 0.52 | 0.34 | 8 | 0 | 85.59 | High |
| ZS149 | Prangenin hydrate | 304.29 | 72.63 | 0.14 | 0.29 | 0.57 | 6 | 2 | 93.04 | High |
| ZS150 | Neohesperidin | 610.62 | 11.57 | −2.05 | 0.69 | −3.04 | 15 | 8 | 234.29 | Low |
The information of the related targets of ZZW.
| ABCB1 | Multidrug resistance protein 1 | P08183 |
| ABCB4 | Multidrug resistance protein 3 | P21439 |
| ABCC1 | Multidrug resistance-associated protein 1 | P33527 |
| ABCC2 | Canalicular multispecific organic anion transporter 1 | Q92887 |
| ABCC3 | Canalicular multispecific organic anion transporter 2 | O15438 |
| ABCG2 | ATP-binding cassette sub-family G member 2 | Q9UNQ0 |
| ABL1 | Tyrosine-protein kinase ABL1 | P00519 |
| ACE | Angiotensin-converting enzyme | P12821 |
| ACP1 | Low molecular weight phosphotyrosine protein phosphatase | P24666 |
| ADIPOQ | Adiponectin | Q15848 |
| ADORA1 | Adenosine receptor A1 | P30542 |
| ADORA2A | Adenosine receptor A2a | P29274 |
| ADORA3 | Adenosine receptor A3 | P33765 |
| ADRA1A | Alpha-1A adrenergic receptor | P35348 |
| ADRA1B | Alpha-1B adrenergic receptor | P35368 |
| ADRA1D | Alpha-1D adrenergic receptor | P25100 |
| ADRB1 | Beta-1 adrenergic receptor | P08588 |
| ADRB2 | Beta-2 adrenergic receptor | P07550 |
| ADRB3 | Beta-3 adrenergic receptor | P13945 |
| ALDH2 | Aldehyde dehydrogenase, mitochondrial | P05091 |
| ALPI | Intestinal-type alkaline phosphatase | P09923 |
| AMY1A | Alpha-amylase 1 | P04745 |
| AMY2A | Pancreatic alpha-amylase | P04746 |
| AOC3 | Membrane primary amine oxidase | Q16853 |
| APP | Amyloid-beta A4 protein | P05067 |
| AR | Androgen receptor | P10275 |
| BCL6 | B-cell lymphoma 6 protein | P41182 |
| BDNF | Brain-derived neurotrophic factor | P23560 |
| BMP2 | Bone morphogenetic protein 2 | P12643 |
| CAMK2A | Calcium/calmodulin-dependent protein kinase type II subunit alpha | Q9UQM7 |
| CAMK2B | Calcium/calmodulin-dependent protein kinase type II subunit beta | Q13554 |
| CBR1 | Carbonyl reductase [NADPH] 1 | P16152 |
| CCK | Cholecystokinin | P06307 |
| CCL11 | Eotaxin | P51671 |
| CCL2 | C-C motif chemokine 2 | P13500 |
| CCR4 | C-C chemokine receptor type 4 | P51679 |
| CD80 | T-lymphocyte activation antigen CD80 | P33681 |
| CELA1 | Chymotrypsin-like elastase family member 1 | Q9UNI1 |
| CHRNA7 | Neuronal acetylcholine receptor subunit alpha-7 | P36544 |
| CNR1 | Cannabinoid receptor 1 | P21554 |
| CNR2 | Cannabinoid receptor 2 | P34972 |
| CREB1 | Cyclic AMP-responsive element-binding protein 1 | P16220 |
| CTSK | Cathepsin K | P43235 |
| CYP1A2 | Cytochrome P450 1A2 | P05177 |
| CYP2C19 | Cytochrome P450 2C19 | P33261 |
| CYP3A4 | Cytochrome P450 3A4 | P08684 |
| DPP4 | Dipeptidyl peptidase 4 | P27487 |
| DRD2 | D(2) dopamine receptor | P14416 |
| DRD3 | D(3) dopamine receptor | P35462 |
| EGFR | Epidermal growth factor receptor | P00533 |
| ESR1 | Estrogen receptor | P03372 |
| ESR2 | Estrogen receptor beta | Q92731 |
| FAAH | Fatty-acid amide hydrolase 1 | O00519 |
| FGF2 | Fibroblast growth factor 2 | P09038 |
| FOS | Proto-oncogene c-Fos | P01100 |
| FUT4 | Alpha-(1,3)-fucosyltransferase 4 | P22083 |
| GABRA3 | Gamma-aminobutyric acid receptor subunit alpha-3 | P34903 |
| GABRB3 | Gamma-aminobutyric acid receptor subunit beta-3 | P28472 |
| GABRG2 | Gamma-aminobutyric acid receptor subunit gamma-2 | P18507 |
| GHRL | Appetite-regulating hormone | Q9UBU3 |
| GLO1 | Lactoylglutathione lyase | Q9UBU3 |
| GSK3B | Glycogen synthase kinase-3 beta | P49841 |
| HDAC6 | Histone deacetylase 6 | Q9UBN7 |
| HIF1A | Hypoxia-inducible factor 1-alpha | Q16665 |
| HMOX1 | Heme oxygenase 1 | P09601 |
| HTR3A | 5-hydroxytryptamine receptor 3A | P46098 |
| IGF2R | Cation-independent mannose-6-phosphate receptor | P11717 |
| IL13 | Interleukin-13 | P35225 |
| IL2 | Interleukin-2 | P60568 |
| IL5 | Interleukin-5 | P05113 |
| IL8 | Interleukin-8 | P10145 |
| JUN | Transcription factor AP-1 | P05412 |
| KCNA3 | Potassium voltage-gated channel subfamily A member 3 | P22001 |
| MAOA | Amine oxidase [flavin-containing] A | P21397 |
| MAOB | Amine oxidase [flavin-containing] B | P27338 |
| MAP2K7 | Dual specificity mitogen-activated protein kinase kinase 7 | O14733 |
| MAP3K7 | Mitogen-activated protein kinase kinase kinase 7 | O43318 |
| MAPK8 | Mitogen-activated protein kinase 8 | P45983 |
| MAPT | Microtubule-associated protein tau | P10636 |
| MCL1 | Induced myeloid leukemia cell differentiation protein Mcl-1 | Q07820 |
| MMP1 | 22 kDa interstitial collagenase | P03956 |
| MMP12 | Macrophage metalloelastase | P39900 |
| MMP9 | 67 kDa matrix metalloproteinase-9 | P14780 |
| NFKB1 | Nuclear factor NF-kappa-B p105 subunit | P19838 |
| NOS1 | Nitric oxide synthase, brain | P29475 |
| NOS2 | Nitric oxide synthase, inducible | P35228 |
| NOS3 | Nitric oxide synthase, endothelial | P29474 |
| NQO1 | NAD(P)H dehydrogenase [quinone] 1 | P15559 |
| NR1I2 | Nuclear receptor subfamily 1 group I member 2 | O75469 |
| NR4A2 | Nuclear receptor subfamily 4 group A member 2 | P43354 |
| ODC1 | Ornithine decarboxylase | P11926 |
| OPRD1 | Delta-type opioid receptor | P41143 |
| OPRK1 | Kappa-type opioid receptor | P41145 |
| OPRL1 | Nociceptin receptor | P41146 |
| OPRM1 | Mu-type opioid receptor | P35372 |
| PARP1 | Poly [ADP-ribose] polymerase 1 | P09874 |
| PDE11A | Dual 3′,5′-cyclic-AMP and -GMP phosphodiesterase 11A | Q9HCR9 |
| PDE4A | cAMP-specific 3′,5′-cyclic phosphodiesterase 4A | P27815 |
| PDE4D | cAMP-specific 3′,5′-cyclic phosphodiesterase 4D | Q08499 |
| PIK3CA | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform | P42336 |
| PIK3CG | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | P48736 |
| PLA2G1B | Phospholipase A2 | P04054 |
| PLAA | Phospholipase A-2-activating protein | Q9Y263 |
| PLG | Plasmin light chain B | P00747 |
| PPARD | Peroxisome proliferator-activated receptor delta | Q03181 |
| PPARG | Peroxisome proliferator-activated receptor gamma | P37231 |
| PRKCB | Protein kinase C beta type | P05771 |
| PRKCG | Protein kinase C gamma type | P05129 |
| PTGS1 | Prostaglandin G/H synthase 1 | P23219 |
| PTGS2 | Prostaglandin G/H synthase 2 | P35354 |
| RARA | Retinoic acid receptor alpha | P10276 |
| REL | Proto-oncogene c-Rel | Q04864 |
| RELA | Transcription factor p65 | Q04206 |
| SHBG | Sex hormone-binding globulin | P04278 |
| SLC6A2 | Sodium-dependent noradrenaline transporter | P23975 |
| SLC6A3 | Sodium-dependent dopamine transporter | Q01959 |
| SLC6A4 | Sodium-dependent serotonin transporter | P31645 |
| SNCA | Alpha-synuclein | P37840 |
| SRD5A1 | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 | P18405 |
| STAT3 | Signal transducer and activator of transcription 3 | P40763 |
| SYK | Tyrosine-protein kinase SYK | P43405 |
| TACR1 | Substance-P receptor | P25103 |
| TACR2 | Substance-K receptor | P21452 |
| TACR3 | Neuromedin-K receptor | P29371 |
| TERT | Telomerase reverse transcriptase | O14746 |
| TLR4 | Toll-like receptor 4 | O00206 |
| TNFRSF1A | Tumor necrosis factor receptor superfamily member 1A | P19438 |
| TNNI3 | Troponin I, cardiac muscle | P19429 |
| TP53 | Cellular tumor antigen p53 | P04637 |
| TTR | Transthyretin | P02766 |
| VDR | Vitamin D3 receptor | P11473 |
| VEGFA | Vascular endothelial growth factor A | P15692 |
| XDH | Xanthine dehydrogenase/oxidase | P47989 |
Figure 3Component-target network of ZZW. The orange and purple ellipse nodes are active components of Baizhu and Zhishi, and the blue parallelogram nodes are the related targets, while the red parallelogram nodes are the same targets of Zhishi and Baizhu.
Figure 4The CS and accumulative CS of active components in ZZW.
Figure 5Go enrichment analysis of the targets of ZZW. The green part represents the shared GO terms of Zhishi and Baizhu.
Figure 6Target-pathway network of ZZW. The red nodes are the common targets of Zhishi and Baizhu, and the green represents the different targets, the yellow represents the pathways. The orange area represents the depression-related pathway, the green area represents the inflammation and infection-related pathway.
Figure 7Distribution of target proteins of ZZW on the compressed FD pathway.